| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0514 |
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| Symbol | |
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| ID | 8709914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 557357 |
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| End bp | 558343 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646482628 |
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| Product | DNA-binding protein |
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| Protein accession | YP_003373755 |
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| Protein GI | 283783001 |
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| COG category | [K] Transcription |
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| COG ID | [COG1476] Predicted transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00329657 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATTTTAG CAGATAAAAT ATTGGAACTG CGTAAACAAA ACGGTTGGTC GCAGGAAGAA
TTGGCGGACA AATTGGGCGT CAGTCGCCAA GCTGTTTCCA AATGGGAAGG CGCACAAAGT
ATCCCGGATA TGGAACGGAT AATTGCATTG AGCCGTTTGT TTGGTGTTAG TACAGATCTT
CTGGTAAAAG ATGAAATTGA TGTTATGGGG AAGAACGTCA ACGCAGGTGA AAATGCCTGC
CAGGAAGAAG CCGGCGTTCG CATGCGGGTA ATTGAGCTGG AAGAAGCCTC CGCTTATATT
GCTCACAGAA TATCATTTGC CGCCTATGTT GCTCTAGGCG TTCTTCTTTG TATTCTGGCG
GCAATACCGT TGGTCGGCAG TGATCTTTTG CTTTCTCACA CAGTAAATGC ACAAGTCGGT
AAAACTATGG GCTTAGCATT CAGTGTTGCG ATTATTACCG TAGCTGTAGC TATTTTTATT
ATTCAGAGTT TCCACGGAAA GCGTTATCAA TATTTGGAAA AAGAGGACTT TGAAACGGCT
TACGGCGTTG ACAGTGTGCT CAAAGAACGC TTGGAACGGT TCATGCCGTC GTATGTGCTG
CGGACGGTCA GCGGTGTCGT TTTATGTATG GTTGCCTTTA TTTTTCTTAT AATTTCGGAT
ATAGCACCGA AATTTTATCA ACTTTCATCC GGCTTTTTTG TAGTTATCGC TATTGCCCTG
GTGGCAGCAG CTGTCTATTT ATTCGTACAG GCGAATATTG TCCGCTCGTC CTATTGCCGT
TTGCTGCAAC CGAAGAAAAA AACTGTCTAT CCTGCAAAGA TTAGCTTATT CCTCCAAGCT
TACTGGCTTA TAATTATCTG CATTTATTTA GCCTACAGTT TCATCACGTC CGATTGGGGA
AAAAGTTGGA TTGTTTGGCC GTTGGCCGCA TTGACTTACG GAGTAATAGA AGTAGTGCTC
AAAGCGTGGA GGCTCGGAAA GAAATAA
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| Protein sequence | MILADKILEL RKQNGWSQEE LADKLGVSRQ AVSKWEGAQS IPDMERIIAL SRLFGVSTDL
LVKDEIDVMG KNVNAGENAC QEEAGVRMRV IELEEASAYI AHRISFAAYV ALGVLLCILA
AIPLVGSDLL LSHTVNAQVG KTMGLAFSVA IITVAVAIFI IQSFHGKRYQ YLEKEDFETA
YGVDSVLKER LERFMPSYVL RTVSGVVLCM VAFIFLIISD IAPKFYQLSS GFFVVIAIAL
VAAAVYLFVQ ANIVRSSYCR LLQPKKKTVY PAKISLFLQA YWLIIICIYL AYSFITSDWG
KSWIVWPLAA LTYGVIEVVL KAWRLGKK
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