Gene HMPREF0424_0514 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0514 
Symbol 
ID8709914 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp557357 
End bp558343 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content44% 
IMG OID646482628 
ProductDNA-binding protein 
Protein accessionYP_003373755 
Protein GI283783001 
COG category[K] Transcription 
COG ID[COG1476] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00329657 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATTTTAG CAGATAAAAT ATTGGAACTG CGTAAACAAA ACGGTTGGTC GCAGGAAGAA 
TTGGCGGACA AATTGGGCGT CAGTCGCCAA GCTGTTTCCA AATGGGAAGG CGCACAAAGT
ATCCCGGATA TGGAACGGAT AATTGCATTG AGCCGTTTGT TTGGTGTTAG TACAGATCTT
CTGGTAAAAG ATGAAATTGA TGTTATGGGG AAGAACGTCA ACGCAGGTGA AAATGCCTGC
CAGGAAGAAG CCGGCGTTCG CATGCGGGTA ATTGAGCTGG AAGAAGCCTC CGCTTATATT
GCTCACAGAA TATCATTTGC CGCCTATGTT GCTCTAGGCG TTCTTCTTTG TATTCTGGCG
GCAATACCGT TGGTCGGCAG TGATCTTTTG CTTTCTCACA CAGTAAATGC ACAAGTCGGT
AAAACTATGG GCTTAGCATT CAGTGTTGCG ATTATTACCG TAGCTGTAGC TATTTTTATT
ATTCAGAGTT TCCACGGAAA GCGTTATCAA TATTTGGAAA AAGAGGACTT TGAAACGGCT
TACGGCGTTG ACAGTGTGCT CAAAGAACGC TTGGAACGGT TCATGCCGTC GTATGTGCTG
CGGACGGTCA GCGGTGTCGT TTTATGTATG GTTGCCTTTA TTTTTCTTAT AATTTCGGAT
ATAGCACCGA AATTTTATCA ACTTTCATCC GGCTTTTTTG TAGTTATCGC TATTGCCCTG
GTGGCAGCAG CTGTCTATTT ATTCGTACAG GCGAATATTG TCCGCTCGTC CTATTGCCGT
TTGCTGCAAC CGAAGAAAAA AACTGTCTAT CCTGCAAAGA TTAGCTTATT CCTCCAAGCT
TACTGGCTTA TAATTATCTG CATTTATTTA GCCTACAGTT TCATCACGTC CGATTGGGGA
AAAAGTTGGA TTGTTTGGCC GTTGGCCGCA TTGACTTACG GAGTAATAGA AGTAGTGCTC
AAAGCGTGGA GGCTCGGAAA GAAATAA
 
Protein sequence
MILADKILEL RKQNGWSQEE LADKLGVSRQ AVSKWEGAQS IPDMERIIAL SRLFGVSTDL 
LVKDEIDVMG KNVNAGENAC QEEAGVRMRV IELEEASAYI AHRISFAAYV ALGVLLCILA
AIPLVGSDLL LSHTVNAQVG KTMGLAFSVA IITVAVAIFI IQSFHGKRYQ YLEKEDFETA
YGVDSVLKER LERFMPSYVL RTVSGVVLCM VAFIFLIISD IAPKFYQLSS GFFVVIAIAL
VAAAVYLFVQ ANIVRSSYCR LLQPKKKTVY PAKISLFLQA YWLIIICIYL AYSFITSDWG
KSWIVWPLAA LTYGVIEVVL KAWRLGKK