| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0493 |
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| Symbol | |
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| ID | 8709226 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 538963 |
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| End bp | 540378 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 646482607 |
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| Product | TRAM domain protein |
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| Protein accession | YP_003373734 |
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| Protein GI | 283782980 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.214175 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGTGA CGATGCGAAT CGAGCGATAT GCGGATCAAG GAAGATGTGT AGGTCATCTT
GACGGACGCG TTGTATTCGT GCGATTTGCG CTGCCTGGTG AGCTGGTTAT TGTGCGTATG
GATGAGCCGA TGCGTGCAAA AGCGCACTTT TTCACTGGTG AAGTTGTGGA AGTTTTGGAG
CCTAGCGCGG ATCGTGTGGA GCCGCAATGG AAGCTCGCTG GTCCTTTGGC TCAAGGCGGC
GGAGTTGGAG GCGCAGATTT AATTCACGTT TCTTTGCCTG GACAGATTCG TTGGAAGGCG
TCCGTGATTG CCAATCAATT CCAGCGTTTA GCACATATGG ATGTTGCGGA TAACGATGTT
AGCGTTGAGC GAATGCCAGG TGATGAGGAG CTTAACGGAT TTAATTGGCG TACGCGCATG
GAGTTGGTTG CGGATGATGA AGGGCGATTG TCTATGCGAA AGCGTGAGTC GCATGATCGC
ATTGCGATTG ATACTATGCC GCTTGCGTCG CGCGCGGTTT TGGCTGTTGC GGATTCTTTG
GATTTGTGGA ATCGAGAATT TGAGCCAAAT TCGCAAATTC GTCTTGCTGT TCCAGAGCCT
CGGGTTGAGG GTTTGGATTT TAATGACAAG GCTGCGCTTC TTGATGCGAT TGGCGAAAAT
TATGCGCTTA TAGTAAATGA TGAGTTGGTT GCAGGCTCGG CTTTGCTGCG AGAGCGCGTG
CGAGTTGCGG TTGATGGTGA TTCGTCGCGT ATGCGTACTT TTGATTACGA TGTTGACGCG
CGCGGTTTTT GGCAGATTCA TCGCGCAGCT CCAGAGCATT TGGTGAACTA CGTTTTGGGA
TTAGTTCGTT CTGCGCTTGG TGGGCGTAGT AAGAATACGG TTTTGTGGGA TTTGTATTCT
GGATCTGGTT TGTTTACGAT TCCGCTTGCA ACTTTGGCTA ATGTTGGCGG AGATTCTTAT
GGTGCTTATG ATGCTGTAGG CGCTTTTGGT GCTGCTGAAC CAGCTCGCGT GCTTAGCATT
GAGGGTGCGC CGATTGCTGT AAAGAATGCA AGGCGAAACA TTGGGCGTGC TGGTCTTAGC
AGGGATGTTG TTGAAGCGCT TGAAGGCGAT GTTGCGCAAA CGCTTGAATC GCAGGTGTTT
AAGGCGAGTA AGTCGTCTAA GATTGTTCGC CGATTTGCGC ATCCTGATGT TGTTGTGTTA
GATCCTCCGC GCGCTGGTGC TAAAGCTCAA GTTTGTAAGC AGATTGCGAA GTCTGGAGCA
AGAAGCGTTG TGTATGTTGC TTGCGATCCG ACTAGTCTTG CTCGCGATGT TGGAACGTTT
AGTGAGCTTG GCTACAGCGT TCAGTCTTTG CGTGTGTTCG ATATATATCC CAACACTCAC
CATACAGAAT CAGTGGCGCT CCTTTACAAA TCGTGA
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| Protein sequence | MQVTMRIERY ADQGRCVGHL DGRVVFVRFA LPGELVIVRM DEPMRAKAHF FTGEVVEVLE
PSADRVEPQW KLAGPLAQGG GVGGADLIHV SLPGQIRWKA SVIANQFQRL AHMDVADNDV
SVERMPGDEE LNGFNWRTRM ELVADDEGRL SMRKRESHDR IAIDTMPLAS RAVLAVADSL
DLWNREFEPN SQIRLAVPEP RVEGLDFNDK AALLDAIGEN YALIVNDELV AGSALLRERV
RVAVDGDSSR MRTFDYDVDA RGFWQIHRAA PEHLVNYVLG LVRSALGGRS KNTVLWDLYS
GSGLFTIPLA TLANVGGDSY GAYDAVGAFG AAEPARVLSI EGAPIAVKNA RRNIGRAGLS
RDVVEALEGD VAQTLESQVF KASKSSKIVR RFAHPDVVVL DPPRAGAKAQ VCKQIAKSGA
RSVVYVACDP TSLARDVGTF SELGYSVQSL RVFDIYPNTH HTESVALLYK S
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