| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0487 |
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| Symbol | |
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| ID | 8708825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 532109 |
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| End bp | 533035 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646482601 |
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| Product | putative dipeptide ABC transporter, permease protein DppB |
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| Protein accession | YP_003373728 |
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| Protein GI | 283782974 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.346546 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTAAGT ACATTCTGCG TCGTATTTTG CAGATGATTC CTGTTGTTCT CGGCACAACA
TTATTAGTTT ATGCTTTAGT ATTTGCTTTG CCTGGAGATC CAGTAAAAGC AATGTTTGGA
GAAAAACCTG TTAATCCTGC AGTGGCTGCA CAAATACGAG CCGAGTATAA CTTAGATAAA
CCATTTATTA TTCAATATTT ACTTTTCTTA AAGAATGCTC TTACCCTCGA TTTTGGTCAT
ACTTTTGCAG GTCAACCAGT TATCGATGAA ATTGGTCGTG CATTCCCAGT TACTGTTCAA
CTAGCAATTA TGGCATTCGC TTTCGAAGCA ATATTTGGTG TCATATTTGG CATAATTTCA
GGTTTGAAGA AAGGCAAGTG GTATGACAGT GTGATCCTGG TTGTATCACT TCTTCTTATT
TCTGTTCCAA CATTTGTGAC AGGTTTCGTA GGACAATACT TATTTGGTGT TAAATGGCGT
ATATTACCAG TTACAGCTAG TAACGATCCT GGATTCTTCG ATTTGCTTCT TCCTGCAATG
GTTCTTGGTT CTGTGTCTAT GGCGTATATC ATTCGACTTA CAAGATCTGA AATTTCTTCA
AATATTTCGC TTGATTATGT GCGTACAGCT CGTGCAAAGG GCTTAAAAGA AGGCTCTGTT
ATTGTTCGCC ACGTTTTGCG CAACTCGCTT ATACCTGTCG TCACCTTCTT AGGCCAGGAT
TTGGGTGCTC TTATGGGCGG TGCAATGATT TCGGAAACAA TCTTCAACAT TCATGGCGTT
GGATTCCTCA CATATCAAGG GATTCTAAAA GGAGAAGGAA ACCTTGTTGT TTCCATTGTC
ACGCTTTTGA CATTGATATT TGTATTTAGC AATTTTCTTG TTGATATGTT GTACGCGGCT
CTTGATCCGC GCATTCGTTA CGCGTGA
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| Protein sequence | MGKYILRRIL QMIPVVLGTT LLVYALVFAL PGDPVKAMFG EKPVNPAVAA QIRAEYNLDK
PFIIQYLLFL KNALTLDFGH TFAGQPVIDE IGRAFPVTVQ LAIMAFAFEA IFGVIFGIIS
GLKKGKWYDS VILVVSLLLI SVPTFVTGFV GQYLFGVKWR ILPVTASNDP GFFDLLLPAM
VLGSVSMAYI IRLTRSEISS NISLDYVRTA RAKGLKEGSV IVRHVLRNSL IPVVTFLGQD
LGALMGGAMI SETIFNIHGV GFLTYQGILK GEGNLVVSIV TLLTLIFVFS NFLVDMLYAA
LDPRIRYA
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