| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0477 |
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| Symbol | rplT |
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| ID | 8709156 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 521417 |
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| End bp | 521800 |
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| Gene Length | 384 bp |
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| Protein Length | 127 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 646482591 |
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| Product | ribosomal protein L20 |
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| Protein accession | YP_003373718 |
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| Protein GI | 283782964 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0292] Ribosomal protein L20 |
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| TIGRFAM ID | [TIGR01032] ribosomal protein L20 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCACGAG TAAAGCGCGC AGTAAACGCT CACAAGAAGC GTCGCGTTGT TCTTGAGAGG
GCTTCTGGCT ACCGCGGTCA GCGCTCCCGT CTTTATCGCA AGGCAAAGGA ACAGCTGCTC
CACTCATTTA CTTATAACTT CCGCGACCGC AAGGCTCGCA AGGGTGATTT CCGCAAGTTG
TGGATTCAGC GCATTAACGC AGCAGTTCGC GCTGAAGGCA TCACTTACAA TCGCTTCATT
CAGGGCTTGC ACTTGGCAGG CATCGAATTG GATCGTCGCG CTCTTGCTGA GCTCGCAGTT
TCCGATATTG AAGCTTTCAA GGCTGTTGTC GAAGCTGCTA AGGCTGCATT GCCAGCTGAT
GTAAACGCTC CAGTTGAAGC CTGA
|
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| Protein sequence | MARVKRAVNA HKKRRVVLER ASGYRGQRSR LYRKAKEQLL HSFTYNFRDR KARKGDFRKL
WIQRINAAVR AEGITYNRFI QGLHLAGIEL DRRALAELAV SDIEAFKAVV EAAKAALPAD
VNAPVEA
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