| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0455 |
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| Symbol | |
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| ID | 8709208 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 499243 |
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| End bp | 500397 |
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| Gene Length | 1155 bp |
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| Protein Length | 384 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646482570 |
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| Product | TIM-barrel protein, nifR3 family |
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| Protein accession | YP_003373699 |
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| Protein GI | 283782945 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTTT CTATAAAACC AGTAGATTTA GGGAAAGTTC ATATTGCAAC TCCTGTTGTT
TTATCTCCAA TGGCTGGGAT CACTAACTGG CCGTTTCGCG TAATTTGCCG CGAATTTGGT
CCGGACGGGC TTTACGTAGC AGAAATGATT ACAGCGCGAG CTCTAGTTGC ACGAAATCCA
AAAGCACTTA GACTTTGCCG TTTTGCGCCT AGCGAAAAAG TGCGCTCTTT GCAGCTTTAT
GGTGTAAATC CTTCTATTGT AGAACAAGCT ACTCGAATTG TTGTCGACGA AAACATGGCT
GATCACGTTG ACTTAAACTT CGGCTGTCCA GTTCCAAAAG TGACGCGACG TGGCGGCGGT
TCTGCTCTTC CTTGGAAAAC TGATTTGTTG CAAGAAATTT TGCATCGCGT TGTTTCTGTT
TGCGAACCTG CAGGAATCCC TGTTACGGCT AAATTCCGTG TTGGTATTGA CGAGAATCAT
GAAACTTTTA TTCAAGCTGG TCATATTGCG CAAGAAGAAG GATGCGCTGC TGTAACTTTG
CATGCTCGCA CAACTGCAGA ATATTACGGT GGTCATTCAG ACTGGCAGCG TATTGGTGAG
CTTGTAGAGA CGCTTGATAT TCCGGTTTTT GGCAATGGTG ATATTTGGGG TGCGGAAGAT
GCGCTCGCAA TGTTTAAAGA AACTGGCTGC GCTGGCGTTG CTATCGGTCG AGGATGCCAG
GGTCGCCCAT GGTTGTTTGC TGATATTCGC AATGCTTGCG AAGGTAGCGA TAATCGTGTT
AATCCTACTT TGGCGGAAGT GGGATCAGTT ATTTTGCGCC ACTTAAATCT TTTAGTTGAG
TTTTATGATG GCGACGAGCG TATGGCTGTT CACGACTTGC GTAAGCATAT TGCTTGGTAT
TTAAAGGGCT TTCCTGTTGG TGGTGGCACT CGTAAAGCGT TTATGGAGTG CGAGTCGATT
GAGGATGTTC AACGTAATCT CGATATGCTT GATGGTTCTC TTTGTTTGCC AAAAAAGGTG
TTAGACACGC CGCGTGGACG AGTTAGATTT GCTAAAAAAG TTCATTTGCC GTATGGGTGG
TTAGATTCTC GTACAACTAG TCACGAAGAG CGAGAGGCGT TATTTGGTGA CGATCCAATG
GATGCAAGTT ACTAG
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| Protein sequence | MNFSIKPVDL GKVHIATPVV LSPMAGITNW PFRVICREFG PDGLYVAEMI TARALVARNP
KALRLCRFAP SEKVRSLQLY GVNPSIVEQA TRIVVDENMA DHVDLNFGCP VPKVTRRGGG
SALPWKTDLL QEILHRVVSV CEPAGIPVTA KFRVGIDENH ETFIQAGHIA QEEGCAAVTL
HARTTAEYYG GHSDWQRIGE LVETLDIPVF GNGDIWGAED ALAMFKETGC AGVAIGRGCQ
GRPWLFADIR NACEGSDNRV NPTLAEVGSV ILRHLNLLVE FYDGDERMAV HDLRKHIAWY
LKGFPVGGGT RKAFMECESI EDVQRNLDML DGSLCLPKKV LDTPRGRVRF AKKVHLPYGW
LDSRTTSHEE REALFGDDPM DASY
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