| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0451 |
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| Symbol | uppS |
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| ID | 8709968 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 494973 |
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| End bp | 495767 |
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| Gene Length | 795 bp |
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| Protein Length | 264 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646482566 |
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| Product | di-trans,poly-cis-decaprenylcistransferase |
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| Protein accession | YP_003373695 |
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| Protein GI | 283782941 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0020] Undecaprenyl pyrophosphate synthase |
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| TIGRFAM ID | [TIGR00055] undecaprenyl diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.40895 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTTTTG AAAACGTGGA TTATAAGTCG CTCGATATTC CAGCGGCTCC TTTTAGTGAC
CCTTCTCACA TACCAGATTT TCCTAAGGGC AAAGTGCCTC GTCATGTCGG TGTGATTATG
GACGGAAACG GACGCTGGGC AAAAGAGCGC GGAATGATTC GAACCGAAGG TCACAAAGCT
GCAGAACCGG TAGTTTTTGA CGTTATTGCA GGAGCTATAG AAGCAGGAGT TCGTTACTTA
AGCTTATACA CTTTTTCTAC CGAAAATTGG AAGCGATCTC CACAAGAAGT GCGCTTTTTA
ATGGGATTTT CTAGGGAAAT TATCCATAGG CGAGTTGCGC AAATGAACGA GTGGGGAGTG
CGAGTTCGTT GGGCAGGAAG GCGCCCTCGT TTGTGGAAGT CTGTTATTGA CGAGTTGGAA
AAAGCGCAAG AAATCACCAA AAATAATAAA ACTATTGACG TTGTTTTTTG CATAAATTAC
GGCGGTCGTG CAGAAATTGC GGATGCTTGC GCGCAAATCG CGAAAGAAAT TCAAAATGGC
AAAATTAAAG GCGATCGTGT AAGTGAAAAA ATGATTGCTG AGCACTTGTA TAATCCGGAT
ATTCCAGATT GCGATTTGGT GATTCGCACT TCCGGCGAGC AGCGCACTAG CAACTTTTTG
CCTTGGCAAG CATCCTACGC GGAACTTGAT TTTGTGCCGG AACTATTCCC GGATTACGGC
CGCGAAGCGC TGTGGAGGTC GATTGACCGC TATGCGCATC GCGACCGCAG GTTTGGTGGC
GTAAAAAACG CCTAG
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| Protein sequence | MAFENVDYKS LDIPAAPFSD PSHIPDFPKG KVPRHVGVIM DGNGRWAKER GMIRTEGHKA
AEPVVFDVIA GAIEAGVRYL SLYTFSTENW KRSPQEVRFL MGFSREIIHR RVAQMNEWGV
RVRWAGRRPR LWKSVIDELE KAQEITKNNK TIDVVFCINY GGRAEIADAC AQIAKEIQNG
KIKGDRVSEK MIAEHLYNPD IPDCDLVIRT SGEQRTSNFL PWQASYAELD FVPELFPDYG
REALWRSIDR YAHRDRRFGG VKNA
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