| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0447 |
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| Symbol | |
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| ID | 8709616 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 491557 |
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| End bp | 492444 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646482562 |
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| Product | PDZ domain family protein |
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| Protein accession | YP_003373692 |
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| Protein GI | 283782938 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3480] Predicted secreted protein containing a PDZ domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0480503 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTCGCT TTTCTACAGG TGCTAGTGTA TTCCGTGCGT GTTTTAGATC CTTGCGCTCG
CTGTCTCATG CTTTAGTTTT GTACATTACT TCGCATTCTT TGCGATATTT TGCAGGATTC
TTTACAGTAA TTGTTGCGAT TTTTGCGTTG TCGCTTCCAA GTGCATACGT CGTAGAAGAG
CCTGGTCCAA CGCAGGATGT TTTAGGATCC CTATCAAATA CTCCTGTGAT TGATATGTCT
GGTTCTCGAG TAAAAGAAAA TCATGATACT GGTAAATTAT TGTTGATTAC TGTCAATGTT
TCTGGTGTTC CTGGATATGA GGTTTCAACA TTTTATTCAT TGATTTCGTG GATGGATCCT
CATAAAAGTT TGTTGCCTCG TGAAGCTATT GTGCCAGTAG GGCAGAGTGC TGACGAGTAT
GAGAAGGAAT CCACAAACGA GATGAATGAT TCGCAAAGCC TTGCTCAAAA TGTTGCGTTA
CAGTACGCGT CTAAGCATCT TGGAATTAAA AAAGAAGATG TAAAAGTTCG TTTACATATT
GAAGATATTG GTGGACCGTC TGCCGGAATG ATGTACACTC TAGGAATTCT TGACAAGCTT
ACTCCTGAAC AAGAAACTGG TGGTAAGACG ATAGCCGGAA CTGGAACTAT TGAAAAATCG
CAAAAAATTG GTGCAATTGG TGGTATTCGG TTAAAGATGA TTGCAGCTAA AAGAGATGGG
GCTACTTGGT TCTTAGCGCC TTACGATAAT TGCAATGAAG TTGTTGGGCA TGTGCCACAA
GGTTTGCGCG TTGTAAGTGT AAAAACATTG GATGATGCTT ACAAAGCGTT AAAAGCTATT
GGTTCTGGTC GTGGTGCAAA TAAATTGCCA AGCTGCAATG TGAAATAA
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| Protein sequence | MFRFSTGASV FRACFRSLRS LSHALVLYIT SHSLRYFAGF FTVIVAIFAL SLPSAYVVEE
PGPTQDVLGS LSNTPVIDMS GSRVKENHDT GKLLLITVNV SGVPGYEVST FYSLISWMDP
HKSLLPREAI VPVGQSADEY EKESTNEMND SQSLAQNVAL QYASKHLGIK KEDVKVRLHI
EDIGGPSAGM MYTLGILDKL TPEQETGGKT IAGTGTIEKS QKIGAIGGIR LKMIAAKRDG
ATWFLAPYDN CNEVVGHVPQ GLRVVSVKTL DDAYKALKAI GSGRGANKLP SCNVK
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