| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0437 |
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| Symbol | |
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| ID | 8708993 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 478282 |
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| End bp | 479478 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482552 |
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| Product | putative dipeptide ABC transporter, permease protein DppB |
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| Protein accession | YP_003373682 |
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| Protein GI | 283782928 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000000277701 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGATATA AGGAAAATAT TAGTAATAGC GATACAAAAA ATAGTAATAG CAGTACGAAA
AATATCAGCA ATAAGCAGAA TGTAAATAAT ACGCAGAAGA AAAATATGCA ACAAAATATT
AGTAATAACA GCAATAATGA ATCCGCAAAA AACTCGCGAA TTATTAGCAA AACCGTAGAT
TTTCTTACGT TTTTAATAAA GCGTTCAGCA AGCGCGGTAC TTGTTTTAAC ACTGATTGCA
GTTGTATTAT TCCTTATTTT CTTTATGCTC CCAGCGAATC CTGCGCAACT AGCTTGCGGA
AAGCCGTGCA CTCCTGAGCG TTTGGCTCGA GTTTCCGCAT TTATGGGCAC GGACGCGCCG
TGGTATGAGC AGCTTGGAAA CTATATTCGT GGGATATTTT TTGGACGAGA ATTTGGAACT
AATTCTGCAT CCTCAGGAAT TTCAGCCGCT GGTGCCGCAA TTATCTGCTC GTCTCCATGC
TTAGGCTGGT CCTTCACGCT TAACGAACCA GTCACAGATC TTATTATGAG CCGTTTTGCT
GTGACAGCTT CTTTGGCGAT TGGCGCTGCA TTACTTTGGG TAATTATTGG TGTAGTAACC
GGAGTGATTT CTGCTTCTAA AGAAGGATCG CTTTTTGATC GTGCATTTAG AGCGCTTTCT
TCAGTGGGGA TTTCGTCCCC TGCTTACCTG ATTGGTATGC TTGCAATACT TGCTTTTGCA
GTATATCTGC CAATTTTCCC TACAGGCGGT TATGTGAATT TTTCGGATGA TCCTTTAGGT
TGGCTGCAGC ATTTGCTACT TCCGTGGATT GTTTTGGCAC TTCTTAACGC TGCTTATTAT
ACGCGACTTA CTCGTGCTCA TATGCTTGAC GAGTTGCAAC AGGATTATAT GCGCACTGCC
TTGGCTAAGG GTATGCCGCG AACGAAAGTT ATAACTCGTC ACGCTCTGCC TAACGTAATG
CTTCCTGTGC TAACAATGTT TGGCTTGGAT CTAGGCGGTT TGCTTGGCGG TGCTGTGATT
ACTGAGAGAG TTTTCTCTAT GCAAGGTTTG GGTTCGCTAC TTCTTGATTC TGTTAAAAAT
CTTGATTTGC AAGTGCTGGT TGGTGTGACG CTTTTTGCGG CTGCGCTTGT GATTGTTGCG
AATCTTATTG TTGACATCTG TTATCGTTTC ATCGATCCTC GTGCTGCAGT CTGTTAG
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| Protein sequence | MRYKENISNS DTKNSNSSTK NISNKQNVNN TQKKNMQQNI SNNSNNESAK NSRIISKTVD
FLTFLIKRSA SAVLVLTLIA VVLFLIFFML PANPAQLACG KPCTPERLAR VSAFMGTDAP
WYEQLGNYIR GIFFGREFGT NSASSGISAA GAAIICSSPC LGWSFTLNEP VTDLIMSRFA
VTASLAIGAA LLWVIIGVVT GVISASKEGS LFDRAFRALS SVGISSPAYL IGMLAILAFA
VYLPIFPTGG YVNFSDDPLG WLQHLLLPWI VLALLNAAYY TRLTRAHMLD ELQQDYMRTA
LAKGMPRTKV ITRHALPNVM LPVLTMFGLD LGGLLGGAVI TERVFSMQGL GSLLLDSVKN
LDLQVLVGVT LFAAALVIVA NLIVDICYRF IDPRAAVC
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