| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0436 |
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| Symbol | |
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| ID | 8709630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 477356 |
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| End bp | 478285 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646482551 |
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| Product | putative oligopeptide ABC transporter, permease protein OppC |
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| Protein accession | YP_003373681 |
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| Protein GI | 283782927 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000000260197 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGAAGGG TCGGTGTATT TCGTTCACGC TATAAGCGTG ATTCATCTAG CGTCACCGTT
CCTACTGGAA ATAATTCTGG CATTATTATC GGAAGTATAA TTATTGCAAT TTTTGTGATT
TTGGCAATTT TTGCCGATGC TTTTACTGCA ATCACTGGCA ATAATCCTTA TGATGAGCAT
CCAGAATATT TAGATTTTAA TTCTGTTCCA ACAGGTTTTG GTGGCATTAA TTTCCAGCAT
TGGTTTGGTC TTACGCCACT TCGTGGTCTT GATATTTTTG CAATTGTGGC TCATGGCGCG
CGCGTATCTC TTGGAATTGG CGTCGCTTCT ACCATAATAT CGCTATTTCT TGGCATCGTA
ATCGGCATGA TTGCAGGGTA TTTCAGTGGT TTTGCAGATG CTTTGCTTTC GCGCACAATG
GACGTGTTCT TCGGTTTCCC GTTCCTGATT TTTGCGATTG CTTTGTCTGC TGTTGTGCCG
CAAGATTTTC CGCGTCCGCT TCTACTAATA CTTGTTTTAG GATTTTTTGG TTGGCCAAGT
ATTGCGCGTT TAGTTCGCGC TCAAACTCTT ACGCTTAAAT CTCGCAATTT TGCAGTTGCA
TCTCGCGTAA TGGGAGCCGG TACGTGGCAT GTTCTTCGTG AACAAATAAT GCCAAATATG
ATGCCGTTGT TGCTTGTGAA TGTAACGTTC CTTATTCCTG GACGAATTGG AGCTGAAGCT
GCGTTGTCTT TCCTTGGCGT TGGTATGAAT CCGCCTTCGC CTTCGTGGGG TCGCGCTATT
GCGGAAGCTG TGCAGTGGGT TTTAGTTGAC CCATGGTATT TACTTTTCCC TGGAACTGCA
CTGTTCTTGC TAACTTTCGG TTTTAATCTT GTTGGTGACG GTTTGGCCAG TGCTCTTCAG
CCTCGCGCTA AAAAGGCGGC GACGGCATGA
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| Protein sequence | MRRVGVFRSR YKRDSSSVTV PTGNNSGIII GSIIIAIFVI LAIFADAFTA ITGNNPYDEH
PEYLDFNSVP TGFGGINFQH WFGLTPLRGL DIFAIVAHGA RVSLGIGVAS TIISLFLGIV
IGMIAGYFSG FADALLSRTM DVFFGFPFLI FAIALSAVVP QDFPRPLLLI LVLGFFGWPS
IARLVRAQTL TLKSRNFAVA SRVMGAGTWH VLREQIMPNM MPLLLVNVTF LIPGRIGAEA
ALSFLGVGMN PPSPSWGRAI AEAVQWVLVD PWYLLFPGTA LFLLTFGFNL VGDGLASALQ
PRAKKAATA
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