| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0429 |
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| Symbol | xseA |
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| ID | 8710051 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 469422 |
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| End bp | 470897 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 646482544 |
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| Product | exodeoxyribonuclease VII, large subunit |
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| Protein accession | YP_003373675 |
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| Protein GI | 283782921 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1570] Exonuclease VII, large subunit |
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| TIGRFAM ID | [TIGR00237] exodeoxyribonuclease VII, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000000348661 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAGCAGC GCGCGTTTGT CCTTCTTTGC GGTCAAGCTG GAAACATGAC CTCGTCAAAT
ATGATGCCGC AATTATTCCA GGATGATGCC CAGCTTGAAC AGCCGCAACC GTCGCAACAA
CCGCTGCTAA ATTTAGCACA GTCGCAGTCG CAACAAGTTC AGTCGCAGCT GCAATCACTT
ACGCCGCAGC AAGCTCAGCC GCGACAGCTC CCTCTAAAAG CCGCCGACAC GACTGCCGAA
AATCCATGGC CTGTTGCCGT TTTAAGCCAA AAGTTCCACA GTGCAGTAGA ACGCTGGCCA
GCCGCGTGGA TTGAGGGTCA AATCGTCGAA ATTAACATGC GCCGCGCTTC TTCCGGTTAC
ATCACCCTTC GCGACAGTAA TGAAGAAGTG TCGATTTCCG TAATGGGCTT CAGCAATTTC
GTGCAGCAGG CGCGCGAACT TCGCCAGGGT GACCGCGTAG TCGTTCACGG CAAGGCGGAT
ATTTGGGTAA AAGCCACGCG TTTGAGCTTC GTTGCAGACG AAATCCGCCG CGTCGGTGCC
GGTGACTTAA AAGCGCAAAT TGACGAGTTG CGAAAAAAGC TTAAGGGCGA GGGCTTATTT
GACGCTGAAA ATAAGGTTCC GCTGCCGGAA TTTCCTAAGT GTGTCGGTCT CGTGTGCGCT
CCTCAAGCGC GCGCGGAGGG CGATGTTATT ACGAACGTGA ATTTGCGCTG GCCTGTTACG
CGCTTCAAAG TTATTCACGC GCACGTGCAG GGCGTGCAGT GCCCGGCGGA TATTATTGCC
GCAATTAAGC AGCTCGACGC GGATCCAGAA GTTGACGTTA TTATCGTTGC TCGCGGCGGC
GGCAGCTTTG AAGATTTGAT TGGTTTTTCA GATGAGGGTG TGGTTCGCGC TACTGCTGCG
TGCGTGACGC CGATTGTGTC TGCAATTGGT CACGAGGACG ATTGGACGCT GATTGATTTG
GCTGCAGACA TGCGCGCTTC GACTCCTACG GATGCTGCAA AGCGCGTGGT TCCAGACGTA
CGCGAGCAGT GGCAGCTTAT TGATAACGCG TTGCAAACTA TGCGCATGCG AATTTCTGCG
CGCGTAGACA ATGAGATTCG TCTCGTTGAA GGTTATGCGA ATCGCCCGAG CCTTACGCGC
CCGAGCACTA TGCTTGAGCC GCACGAGCGT TTGGTTGAGC AGGCTGTTGA GCGAATGCGT
CACGGTTTGG TGCGACTTCT TGACGACGCG AGTTTGACTG TTGAGAAGGC TCACGCGAGC
TTGACTGCGC TAAGTCCGCA ATCGACTTTG AATCGCGGGT ACGCTGTTGT GCAGCTCAGT
GGTGGGCGAG TGCTTGACGA TGCGGCTTTA GCGAAAGTTG GCGACGATAT GACAGTTACG
CTTAAAAGTG GCGTGGTTCT TGGCAAGGTG ACTGGAACAA AGTCAGCTGT TACTAAGTCT
GCTTTCATAA AGCCAAGTAA AAAGTCAAGT AAGTAA
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| Protein sequence | MQQRAFVLLC GQAGNMTSSN MMPQLFQDDA QLEQPQPSQQ PLLNLAQSQS QQVQSQLQSL
TPQQAQPRQL PLKAADTTAE NPWPVAVLSQ KFHSAVERWP AAWIEGQIVE INMRRASSGY
ITLRDSNEEV SISVMGFSNF VQQARELRQG DRVVVHGKAD IWVKATRLSF VADEIRRVGA
GDLKAQIDEL RKKLKGEGLF DAENKVPLPE FPKCVGLVCA PQARAEGDVI TNVNLRWPVT
RFKVIHAHVQ GVQCPADIIA AIKQLDADPE VDVIIVARGG GSFEDLIGFS DEGVVRATAA
CVTPIVSAIG HEDDWTLIDL AADMRASTPT DAAKRVVPDV REQWQLIDNA LQTMRMRISA
RVDNEIRLVE GYANRPSLTR PSTMLEPHER LVEQAVERMR HGLVRLLDDA SLTVEKAHAS
LTALSPQSTL NRGYAVVQLS GGRVLDDAAL AKVGDDMTVT LKSGVVLGKV TGTKSAVTKS
AFIKPSKKSS K
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