| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0408 |
|---|
| Symbol | |
|---|
| ID | 8709334 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 436260 |
|---|
| End bp | 437627 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 646482524 |
|---|
| Product | peptidase dimerization domain protein |
|---|
| Protein accession | YP_003373657 |
|---|
| Protein GI | 283782903 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGGTT TGGCTGTCGA AGACGTGCGC GCTCGCGTGC AGGACGCTTG GAATGACGTA
GTTTCCGTGT TGAATAAGAA GATTTCGCTG GCTGCGGTTT CTGCTAAGGG TATTGCCGGC
GAGCATATGC AGAAGTCCGC GCAATACGTG GCTGGGGTAT TGCGTGAGGT TGGTATTGAC
GCGCGCGTTG AGCAGTCCAC GAATCCGGAC GGCACTCCAG GGGCTTTCGA AGTGGTCGGC
TCTCGTATCG TAAACCCAAG CGCGCCAACG GTTTTGCTCT ACGCACATCA CGATGTGCAG
CCAGTGCCAG ACCCATCTGA GTGGGAAACT AACCCATTTG AAGGCACAGA GCGCGACGGT
CGCCTCTACG GACGCGGCTC AGCTGACGAC GGCGGCGGAA TCGCAATTCA CTACGGAGCT
TTGCGCGCAC TAAGCGACGA TTTGCGCGTA AATATTAAGG TTTTCATCGA AGGTGAAGAG
GAGATGGGCT CGCCAAGCTT CATCCCGTTC ATTGAATCGC ATAAAGACGA GTTCGAATCC
GACGTAATCA TTGTGGCTGA TTCTGGCAAT TGGTCCGCCG AAATCCCAAG TCTTACAACG
AGTTTGCGTG GAAATACCGA CGTGGATGTA AGGGTTAAAG TACTTGGTCA TCAAGTGCAT
TCTGGACAGT TTGGCGGTCC GATTTTGGAC GCTTACACGC TCGCTTCCAT GCTTATTGCC
TCGCTTTACA ACGAAGCTGG CGACTTGGCA GTTCCTGGAA TTGAAGCACA GGAACCGGTT
GGCGGTTTGC AGCGCGATTT GGACGAAGCA CAAGTGCGCG CCGACGCTTC CGTGGTCGAT
TCTTATAAGC TTGCAGGCAC CGGTTCTCTC GCCGCGCGCA TGTGGACTAA GCCAAGCCTG
ACGGTAATCG GCATGGACGC ACATCCTGTT GAGGGCAGTT TTAATGTGAT TGCGCACGAA
ACTAAGTTGC GTCTTTCGCT TCGTACCGCG CCTTCGCAGC GTCCGGAAGA AGCGCAAAAA
GCGTTGTGTG ACTTCTTGGT ATCTCACGCG CCTTTTGGTG CGGAAGTTAC TGCAGAGCCG
ATTGATAACG GCATGGGTTG GGCAATGGAT CCGGATGCTG TTGCAACGAA GGATGCGCTC
GCTTCTATGC GCGATGCTTT CGGCGTGGAG CCGGTAAACA AGGGCGAGGG CGGCTCGATT
CCGTTTATTC CTGAGCTTCA GCGCATCTTC CCGAAGGCGC AGGTGCTGGT GACGGGTCCG
GAAGACCCTA AGTCTAATGC ACACAGCCCG AACGAGTCGA TTTCGCTTTC TGGTTTGCGC
GGAAATATTG TGACGGAAGC GCTGCTTTTG GATCGATTGG GCGAGTAA
|
|---|
| Protein sequence | MAGLAVEDVR ARVQDAWNDV VSVLNKKISL AAVSAKGIAG EHMQKSAQYV AGVLREVGID
ARVEQSTNPD GTPGAFEVVG SRIVNPSAPT VLLYAHHDVQ PVPDPSEWET NPFEGTERDG
RLYGRGSADD GGGIAIHYGA LRALSDDLRV NIKVFIEGEE EMGSPSFIPF IESHKDEFES
DVIIVADSGN WSAEIPSLTT SLRGNTDVDV RVKVLGHQVH SGQFGGPILD AYTLASMLIA
SLYNEAGDLA VPGIEAQEPV GGLQRDLDEA QVRADASVVD SYKLAGTGSL AARMWTKPSL
TVIGMDAHPV EGSFNVIAHE TKLRLSLRTA PSQRPEEAQK ALCDFLVSHA PFGAEVTAEP
IDNGMGWAMD PDAVATKDAL ASMRDAFGVE PVNKGEGGSI PFIPELQRIF PKAQVLVTGP
EDPKSNAHSP NESISLSGLR GNIVTEALLL DRLGE
|
|---|
| |