| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0404 |
|---|
| Symbol | thyA |
|---|
| ID | 8709043 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 433798 |
|---|
| End bp | 434670 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 646482520 |
|---|
| Product | thymidylate synthase |
|---|
| Protein accession | YP_003373653 |
|---|
| Protein GI | 283782899 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0207] Thymidylate synthase |
|---|
| TIGRFAM ID | [TIGR03284] thymidylate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTAA CAGAAGAAGA ACTTGTCGCA ATTCGCGCGC GCGTACCACA AAAACCGCTT
TCCAGCATCC CAACTCCTTA CGAGGATTTA GTGCGAAATA TCCTTACGGA AGGCACTTTA
AAATCAGATC GTACAGGCAC TGGCACGATT TCGCTTTTTG GCCAGCAAAT CCGCTTCGAT
ATTAGCAAAT ACTTCCCGCT GATTACCACG AAAACCGTGT TTTTCAAAGG ACTTGCGTAC
GAGCTGCTTT GGTTCCTTAA AGGCTCGAGT AATGTGCGTT GGTTGCAAGA AAACGGCGTT
CATATTTGGG ACGAGTGGGC GGACGAAAAC GGCGATTTGG GCCCTGTTTA CGGCGTGCAG
TGGAGGAGTT GGCCGGCTCC GACAGCGGAA AATCCAAACC GCACAATCGA CCAAATCGCA
AACGTTCTGG ATCTTATGAA GAATCACCCA GATTCTCGCC GCATGATTGT TAGCGCTTGG
AACCCTGCGG AAGTTGAACA TATGGCGTTG CCGCCTTGCC ACTCGCTTTT CCAGTTCTAC
GTTGCTGACG GCAAGCTTTC GTGCCAGCTT TACCAGCGTT CTTGCGACAT GTTCCTCGGC
GTGCCGTTTA ACATTGCATC CTACTCGCTT TTGACGATGA TGATGGCTCA GCAGGCAGGC
CTTGAGCCAG GCGAGTTCGT GTGGACGGGC GGCGATTGCC ATATTTACGA CAATCACGTT
GAGCAGGTGC TCGAGCAGCT TTCGCGCGAG CCATACCCGT ATCCGCAACT TGAAATTCGT
AAGGCGGATT CGATTTTTGA CTACGATTAC AGCGATTTTA AGGTGGTTGA GTACAAGCAT
CATCCGACGA TTAAAGCGCC GGTTGCGGTG TGA
|
|---|
| Protein sequence | MALTEEELVA IRARVPQKPL SSIPTPYEDL VRNILTEGTL KSDRTGTGTI SLFGQQIRFD
ISKYFPLITT KTVFFKGLAY ELLWFLKGSS NVRWLQENGV HIWDEWADEN GDLGPVYGVQ
WRSWPAPTAE NPNRTIDQIA NVLDLMKNHP DSRRMIVSAW NPAEVEHMAL PPCHSLFQFY
VADGKLSCQL YQRSCDMFLG VPFNIASYSL LTMMMAQQAG LEPGEFVWTG GDCHIYDNHV
EQVLEQLSRE PYPYPQLEIR KADSIFDYDY SDFKVVEYKH HPTIKAPVAV
|
|---|
| |