| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0393 |
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| Symbol | lysS |
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| ID | 8710062 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 422568 |
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| End bp | 424265 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 646482509 |
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| Product | lysine--tRNA ligase |
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| Protein accession | YP_003373642 |
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| Protein GI | 283782888 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
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| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGACA CCAATACTGC AATGTCTGCC GCGCAAAGTG CCGCAGAATC TGCCGCTAAA
AATGCAGCAG AAAACGAAGC AACAGATACC GTCAATGAAA TTGACACTGT TGAACATGCC
GAAATGTTAC TCGCTCAAGA CGAGGCAATC GCCAAGCGCG TAAACGAAGG CGCAACCTTG
GATGAAGCAA TCGACCCAAG CAATAAAGAA TTTGGGCCAC AAGCTCATCC TGAGCAGGTA
CAGATGCGCG TTGCTAAGCG TGCAATGATG CTTAAGGAGG GTGTGCAGCC TTATCCTGTG
CATCTTAACG TTACTGACAC AATCGAAAAG GTGCGTGCTG ATTTCGATGG CAAGCTTGAA
GCTGGCGAAG AAACCGATAC CGAGGTTGGT ATTGCAGGTC GCGTGCTTTT CTTGCGTAAC
GCTGGCGGCT TGTGCTTTGT TAAGCTTTCT GCCGGTGACG GTACTACGAT TCAGGCGATG
GTTTCCAAGA AGGAAATTGG TGAGGAGTCC ATTAAAAGTT TTAAGCAGAT GGTGGATTTG
GGTGACCACT TGTACGTTCG TGGTCGCGTG ATTTCTTCTA AGACTGGCGA GCTTTCTGTA
TTTGCAACCG AGTGGGCGAT TGCGGCTAAG GCTTTGCAGC CGCTTCCGGC TTTGCATAAG
GAATTAAGCG ACGACACTCG TACGCGCAAG CCTTATATTG GCATGATTGC GGACGAGAAG
ATTCGCGATA TGGTTCGCAG GCGTTCGCGC GCTGTGGCTT CTCTTCGCCG TACTTTCGAC
AGTCATGACT TCTTGGAAGT CGAAACTCCA ATGTTGCAAA CGGTTCACGG CGGTGCTGCT
GCTCGTCCAT TCACAACTCA CATGAACGCT TTCGACATTG ATCTTTATTT GCGCATTGCT
CCGGAGCTTT TCTTGAAGCG CTGCTTGGTT GGTGGCATTG AGCGCGTGTT TGAAATCAAC
CGCGATTTTA GAAACGAAGG CGTGGACGCA ACTCACGCTC CAGAGTTTAC GATGCTTGAG
GCTTACCAGG CTTACGGCAC TTACGATACG ATTGCTGCTC TTACTAAAGA GCTGATTCAG
AAGGCTGCAC TAGACGCATT CGGATCTACT AAGGTGACTT TGCTCAACGG CGAAGAATAC
GATTTTGGTG GCGAATGGAA GCAGATTACC ATGTACGGCT CGCTTTCTGA GGCTTTGGGC
GAGGAGATTA CTCCGGAAAC TTCTGTTGAG CATTTGGGTG CGATTGCAGA CAAGCTTGGC
GTTGAGCGCG ATGACGTGGA AAATCACGGC AAGTTGGTTG AGCACTTGTG GGAGCACTTC
TACGAGGATA AGCTTTACGA GCCAACGTTT GTGCGCGACT TCCCAGTGGA GACCAGCCCT
CTTGTTAAGG GTCACCGCAC AAAGCCAGGA ATGGTTGAAA AGTGGGATTT GTATGTGCGT
GGATTTGAGC TTGCAACCGG CTACTCCGAG CTTAACGATC CTGTTGTGCA GCGCGAGCGT
TTTGTTGCTC AAGCTAAGGA TGCTTTGGCT GGAGACGTTG AGGCAATGGA TATTGACGAG
GACTTCATTG AGGCTCTCGG CGTCGGTATG CCTCCTGCTG GCGGCATGGG AATGGGTATT
GATCGCTTGC TGATCGCTCT TACGGGCGCA ACTATTCGCG AGACGATTAC CTTCCCACTC
GTGAAGCCTC TTCGCTAG
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| Protein sequence | MTDTNTAMSA AQSAAESAAK NAAENEATDT VNEIDTVEHA EMLLAQDEAI AKRVNEGATL
DEAIDPSNKE FGPQAHPEQV QMRVAKRAMM LKEGVQPYPV HLNVTDTIEK VRADFDGKLE
AGEETDTEVG IAGRVLFLRN AGGLCFVKLS AGDGTTIQAM VSKKEIGEES IKSFKQMVDL
GDHLYVRGRV ISSKTGELSV FATEWAIAAK ALQPLPALHK ELSDDTRTRK PYIGMIADEK
IRDMVRRRSR AVASLRRTFD SHDFLEVETP MLQTVHGGAA ARPFTTHMNA FDIDLYLRIA
PELFLKRCLV GGIERVFEIN RDFRNEGVDA THAPEFTMLE AYQAYGTYDT IAALTKELIQ
KAALDAFGST KVTLLNGEEY DFGGEWKQIT MYGSLSEALG EEITPETSVE HLGAIADKLG
VERDDVENHG KLVEHLWEHF YEDKLYEPTF VRDFPVETSP LVKGHRTKPG MVEKWDLYVR
GFELATGYSE LNDPVVQRER FVAQAKDALA GDVEAMDIDE DFIEALGVGM PPAGGMGMGI
DRLLIALTGA TIRETITFPL VKPLR
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