| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0380 |
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| Symbol | aroB |
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| ID | 8708763 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 408099 |
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| End bp | 409781 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646482496 |
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| Product | 3-dehydroquinate synthase |
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| Protein accession | YP_003373630 |
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| Protein GI | 283782876 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0337] 3-dehydroquinate synthetase |
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| TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAACA CTAAACTTCC GCTAGCTGTT ATTATTGGCA TGCCTGCTGC TGGAAAAACG
CGTGTTGGCC GCGAAGTTGC GCATCTTATG AATCTGCCTT TTTATGATAC AGATGACATG
ATCGAGTGCG ATATTGATAT GTCAATACCG CAATATTTCG AGGAATATGG CCAGGATGCT
TTTCGTAAAA TAGAAGCTCG CATAGTGCGA GAGGCAATTT TGGGAGATAC ACCTACAGAA
GATTCTACAA AGGGAATAGT TTCGCTTGGT GGCGGTGCGC CTATGCGTGA AGAAACTCAA
AAAGTTTTGC GTGAGTATAT GCGCTGTGGC GGTCGCGTTG TGTATTTGCA AGCAAATGCT
AAAGAGGCTA TTGAGCGTGC AAGCTGGAAT AATAATCGTC CTATGTTTTC TGGAGAAGAT
GCGCAAAAGC GTTGGATGGA ATTATTTGAG CAGAGAGATC CTGTTTTTAG AGCGGTATCG
AATATTCACA TGCAAACAAA AGGTTCGACT CCGTATATGG CTGCAGAAAA ATTAAGGAGC
ATGATTATGC AACGTATTGT GCACGTAACA GGTGAAGGAA TTGAACCATA CGATGTGCGA
ATTGGTGACG GTGCAATGCA ACTTCTGCCG CAAATGCTTG GAACTAAGCC AGTTAAAGTG
GCGTTAGTTC ACACGCAACC TGTTCAGCGT CATAGCGACA AAGCTCGAAC TATTTTGCGC
CAATCTGGTT ACGAAGTTTT CGACATGTTA ATTCCGGATG CAGAAGCTGG AAAAACTATT
AAAGTTGCAA GTGGATTGTG GGCTAACCTG GCAGAAGCTG GTTTTACTCG TTCGGATGCA
ATTGTTGGTT TAGGCGGAGG AGCAGCAACG GATGTCGCTG GATTTGTTGC TGCAACTTGG
ATGCGTGGAA TTCGCTATGT AAACTGCCCT ACTTCGCTTC TTGCGATGGT TGACGCGTCT
ACGGGCGGTA AAACTGGTAT TAATACGGAT GCTGGAAAGA ATCTAGTCGG CAGCTTTTAC
ACTCCAGCTG GCGTTTTAGC AGATACTTCT ACGCTTGCAA CTCTTCCAAA CGATATTCTT
ATTGAAGGCT TGGGCGAGGT TGCAAAATCT GGTTTTATTC GCGACGGCGA AATTTTGAAG
ATTCTTAGCG ATGCCAATAA CGCAAGGCTT TTGCGTGAAT TTAATGGGGA TGATTTAGAA
AATAATAACG AACTTCATGA ACTGCTCGTG GAGCTTATTG AACGCACAGT TAAAGTAAAG
GCGTATCACG TATCGAGCGA TTTAAAAGAG CAGGGTTTGC GCGAGTTTTT GAACTACGGG
CATACGCTTG GTCACGCTAT TGAGCAGATT GAGCACTTCC GTTGGCGTCA TGGAAACGCT
GTAGCTGTTG GCATGGTTTT TGCGGCGGAG CTTGCGCAAA TTTTAGGATA TTTGGATGCG
GGAGACGTTG CGTATCATCG TTCGCTTTTG GATTCGCTTG GATTGCCAAC TTCGTGGCAG
TGTGCCAAAG ATGCGGATGC TGCTTTTGAG TGTGTGCTTA ACCTTATGCA TCGCGACAAG
AAAGCGCGCG GCAACATGCT ACGTTTCGTA ATTTTGGATG GTATTTCTAA TCCTATGCAT
TTAGACAATC CGCCTATTGA AGCTGTTCGT GAAGCTTTTG AGCGCGTTTA TAAGCAAAAA
TAA
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| Protein sequence | MSNTKLPLAV IIGMPAAGKT RVGREVAHLM NLPFYDTDDM IECDIDMSIP QYFEEYGQDA
FRKIEARIVR EAILGDTPTE DSTKGIVSLG GGAPMREETQ KVLREYMRCG GRVVYLQANA
KEAIERASWN NNRPMFSGED AQKRWMELFE QRDPVFRAVS NIHMQTKGST PYMAAEKLRS
MIMQRIVHVT GEGIEPYDVR IGDGAMQLLP QMLGTKPVKV ALVHTQPVQR HSDKARTILR
QSGYEVFDML IPDAEAGKTI KVASGLWANL AEAGFTRSDA IVGLGGGAAT DVAGFVAATW
MRGIRYVNCP TSLLAMVDAS TGGKTGINTD AGKNLVGSFY TPAGVLADTS TLATLPNDIL
IEGLGEVAKS GFIRDGEILK ILSDANNARL LREFNGDDLE NNNELHELLV ELIERTVKVK
AYHVSSDLKE QGLREFLNYG HTLGHAIEQI EHFRWRHGNA VAVGMVFAAE LAQILGYLDA
GDVAYHRSLL DSLGLPTSWQ CAKDADAAFE CVLNLMHRDK KARGNMLRFV ILDGISNPMH
LDNPPIEAVR EAFERVYKQK
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