| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0377 |
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| Symbol | |
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| ID | 8709232 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 405086 |
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| End bp | 406276 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646482493 |
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| Product | conserved hypothetical protein, YceG family |
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| Protein accession | YP_003373627 |
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| Protein GI | 283782873 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1559] Predicted periplasmic solute-binding protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCTGACA ATTTTGATGA ATTTTTTGAC AAACATGCAA AGTGGACTGA GCATGATGGC
GAGCCGTCGT CAGAATCATC TAATTCTTCT AAATACAAGT CTTCGACTGT TAGCTCCAGA
AAACGTGCTA AAGCTCGTCT TGAAGCAAAA AAACGCAGGC GTAGAGCAAA AGTCGTTTTA
TCTATTCTGC TCGTATTCGT ATTAGCTGTT GTTGGATATT TTGGATACAG TGCGGTTCGC
GCGTGGAAAT TATCTCAAAA TAGCGAGTCT GTTGCAGATT GGCCAGGCCC AGGCTTTGGA
ACGGTTGAGT TTACTATTGA CACCGGCGAG GGTGCTATTA GCGTTGCCAA CAAATTAGTT
AAGGCAAATG TTGTTAAATC TCAATCAGCT TTTACTTCAG CTGTTTCTGC AAATAATAAA
ATTTTGTATC CTGGCGTTTA CTCACTGAAA AAACATATGG CTGCTATTGA TGTAGTTGAT
ATTCTTTCAG ATCAAACAAA AGCAGGCGGA TTCCTTGAAG TTCGTGCAGG GGATCACGCA
GCAGACGTTT TGCAAAAAGC TTCAACATTA TCTGGAATAA GTTTAGATAA ATTCAAGGCT
GCGTTAGCTG ATGGTGCTGC AGGAATTCTG CCTGCTGAAG CAAACGGTAG TGTTGAAGGC
TGGCTAGAGC CTGGAGTTTA TAACGTAAAA GCTATGAAAA GTGCGGATGC TATTCTTTCC
GCAATGGTAA AAAAGCGTAT TGAAAAACTT GATTCTCTTG GAATTCCTAA AGGTAAAGAT
AGAGAAAAAG CCTTAATTAT GGCATCTATT GCCGAAGCTG AAGTGAATAA TCGCGAATAT
TATGGCAAAG TTATTCGCGT AATACTGAAC CGTTTGGCAA AAGATATGTC GTTAGGAATG
GATTCTACTG TTGGTTACGG CGCGGGAGTA AAACCTATTA AACTCACGCA AGCAATGCTT
GACGATGCAA ATAATCCGTA TAATACACGT ATTCATAAGG GTTTGACTCC TACGCCTATT
GGCATTGCTG GAGACAACGC TCTTCTTGCT ACTATTAAGC CTCAAGACGG TCCGTGGCTT
TACTTCGTCA CCACGAATTT GAAAACTGGC GAAACGAAGT TTGCGGATAA CAAAGACGAC
TTTTTGAAGT TCCGCGACGA GTACAAGCGC AACAATCCCG AAGGTAACTA A
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| Protein sequence | MSDNFDEFFD KHAKWTEHDG EPSSESSNSS KYKSSTVSSR KRAKARLEAK KRRRRAKVVL
SILLVFVLAV VGYFGYSAVR AWKLSQNSES VADWPGPGFG TVEFTIDTGE GAISVANKLV
KANVVKSQSA FTSAVSANNK ILYPGVYSLK KHMAAIDVVD ILSDQTKAGG FLEVRAGDHA
ADVLQKASTL SGISLDKFKA ALADGAAGIL PAEANGSVEG WLEPGVYNVK AMKSADAILS
AMVKKRIEKL DSLGIPKGKD REKALIMASI AEAEVNNREY YGKVIRVILN RLAKDMSLGM
DSTVGYGAGV KPIKLTQAML DDANNPYNTR IHKGLTPTPI GIAGDNALLA TIKPQDGPWL
YFVTTNLKTG ETKFADNKDD FLKFRDEYKR NNPEGN
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