| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0367 |
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| Symbol | |
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| ID | 8709005 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 396868 |
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| End bp | 398079 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482483 |
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| Product | efflux ABC transporter, permease protein |
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| Protein accession | YP_003373617 |
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| Protein GI | 283782863 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3127] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCACTA TTACGCTAAA GCGATTGCCG CTGGAAAATC TTAAACGCAA GCCATTGCGC
ACTGCTGCAC TTATTATTGT ATCTGCGTGC TTGTCTGCAA TATTTTTCGG CGGCTCGCTG
ATTTCTATGA ATCTTGAACG CGGCTTGAAC AGTATGCGAG AACGCATGGG AGCCGATATT
ATGGTTATCC CTCAAGGTAC GCACACTAAG GCAGAAGCGT TGCTTACAAA CAGTGGTTCA
AGCACTTTTT ATTTCACTAA CGATATTGAG AATTTAGTAA GACGCTCTCC GGGTGTGCAA
AAGGCGAGTG CACAAACGTA TATTTCTTCG CTTTCTGCAG GATGTTGCGC TGAAAAATTG
CAAATTATTG GTTTTGATCC CGATTCTGAT TTTGTTATAG GTCCTTGGAT TTATTCTCAA
CATAAGCAGA AGTTACAAAA AGGCGAGATG ATTGCTGGCG CAAATGTAAT CGTGTCTTAT
ATGAATACTG TTCGTCTTTT TGGACACCAA TGGCCTGTAG CTGCACAGCT TGCAAAAACC
GGCACAAGCA TTGATAATTC AGTGTTTGTG CGACGCGAAA GTGTGCCGCA AGTAGTTGAG
TATTCAACGA AAGTAGGGCA CACTGCTATT CCAAAGGAAT ATGCTAAAAA AGCAGTTTCT
GCAGTACTTG TAAAAGTACA AAAGGGTTAC AGCGCGCAAG AAGTTGCAAA AAATATTCGC
AAAACAACTG GTCTTTCAAG CATTGGCATA GTTTTTCCGG GCGGAATTAC AGCAACTACG
CAAGCTAATC TTGGTGTTTT TACTCGCACG TTGACTTTTA TAATTGCTGC GTGCTGGCTA
GTTGGATTGC TAGTTTTAGT TGCAGTGTTT TCAACATCTG TAAACGAACG CAAAAAAGAG
TTTGCTTCTC TTCGCATACT TGGCACAACA AGAAATATGC TTTTAGGCGT TGTCGTTAGG
GAATCTGCGA TACTTGGCTT AGTTGGTGGA GTATTGGGGG TTGCGTCTGC AAGTCTTATA
TTGTTCCCTT ACAGTTCTCT TATTTCTGAA CAGTTGCAGC TTCCGTATTT GGAAGTGACT
GCGCTACCAG TAGCAGTGCT TATGTTAGCG TCTGTGCTAC TTGCGCTTGT TGCAGTTGTT
GTAGCTTCAG CGCTTACCAC ATTGCGTATT GCTATGCGCG AAACGTATTT GACACTTAGG
TCAGGTGAGT AA
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| Protein sequence | MRTITLKRLP LENLKRKPLR TAALIIVSAC LSAIFFGGSL ISMNLERGLN SMRERMGADI
MVIPQGTHTK AEALLTNSGS STFYFTNDIE NLVRRSPGVQ KASAQTYISS LSAGCCAEKL
QIIGFDPDSD FVIGPWIYSQ HKQKLQKGEM IAGANVIVSY MNTVRLFGHQ WPVAAQLAKT
GTSIDNSVFV RRESVPQVVE YSTKVGHTAI PKEYAKKAVS AVLVKVQKGY SAQEVAKNIR
KTTGLSSIGI VFPGGITATT QANLGVFTRT LTFIIAACWL VGLLVLVAVF STSVNERKKE
FASLRILGTT RNMLLGVVVR ESAILGLVGG VLGVASASLI LFPYSSLISE QLQLPYLEVT
ALPVAVLMLA SVLLALVAVV VASALTTLRI AMRETYLTLR SGE
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