Gene HMPREF0424_0353 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0353 
Symbol 
ID8709048 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp381250 
End bp381960 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content42% 
IMG OID646482469 
Producthypothetical protein 
Protein accessionYP_003373604 
Protein GI283782850 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTAATC GTTGTAACAA GAGGCAGTTT CTTGCGCTGT TCTGGATGCT GCTGTTTGCT 
GTTTTATGTG GGATTGTTAT TGGCTTGTTG CTTCCTAAAA TAAACAGTAG CGTTGGGAAA 
ATTACAGGAG AATATGAAGC AAGCGGAGAA GCTGCGCAAG CATTGGAAAA ATTGCGTATA 
TCTAAGCCTT ATCGTTACGG GTACGAGCGT CAAGTATTTG GATATCGTAC TACTGACGAT 
GACAGTAACG GATGTGACGT TAGGGAAGAC GTTTTAGCGC GTGATTTACA AAATGTGAAA 
TATAAGTACG CAGGATCCTG CCAAGTGCGT TTCGGCTTGT TGCATGATCC GTATACTGGC 
AAAGATATTC ACTTCGTGCG TGGGCGAAAA ACCAGTGCAT TAGTTCAAAT AGATCATGTT 
GTTGCATTAC AAAATGCGTG GGAATCTGGA GCGTGGAAAT GGAATCGTGC AAAACGATTA 
AAATTTGGCA ACGATATGAT GAACCTACTC GCGGTTGAAG GAGCTGCTAA TCAAGAAAAA 
GGTTCCGCGT CCGCAGCTTA CTGGCTTCCT TCAAACAAAA CCTTCAGGTG CGAATATGTT 
GCTAGGCAAA TAGCTGTTAA GTATAAATAT GGTTTAACTG TAACTCGCGA AGAAAAGCAG 
AGTATGGAAA GCGTATTGCA TAACTGTTCT GCACAAAAAT TACCAAAGTA A
 
Protein sequence
MRNRCNKRQF LALFWMLLFA VLCGIVIGLL LPKINSSVGK ITGEYEASGE AAQALEKLRI 
SKPYRYGYER QVFGYRTTDD DSNGCDVRED VLARDLQNVK YKYAGSCQVR FGLLHDPYTG 
KDIHFVRGRK TSALVQIDHV VALQNAWESG AWKWNRAKRL KFGNDMMNLL AVEGAANQEK 
GSASAAYWLP SNKTFRCEYV ARQIAVKYKY GLTVTREEKQ SMESVLHNCS AQKLPK