| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0350 |
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| Symbol | rnhB |
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| ID | 8708895 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 376513 |
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| End bp | 377256 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646482466 |
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| Product | ribonuclease HII |
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| Protein accession | YP_003373601 |
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| Protein GI | 283782847 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0164] Ribonuclease HII |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCAAATA AATCATCCAA TATACCGCTT GTTCCATCAT TTAAATATGA GCAAGATCTG
CTTTGCGAAG GCTATGATTG GGTTATTGGT CTTGATGAAG TAGGAAGAGG CTCTCTTGCA
GGTCCTGTGA TGGTAGGAGC TGCAGTTATT GGAATTAAAC AAGTAAAAGA AAACTATATG
CCTGAAGGCT TAGCTGATTC TAAATTGCTG AGTGAAAAGC GTCGAGAAGA GCTTTATGAA
CCGTTGCAAA AATGGTGTAC AACTTGGGCA GTCGGGTCTT GCACTAACAC AGAAATTGAT
GAGTGGGGTA TTAGCTATGC TCTTGGTGTT GCTGCATTAA AAGCAATTTC TAAAGTTGAG
GAAGATATTA AAAAGCTAAG TTTTAGCGTA AATGCGAATA CGCGTGAGAA TACGCGTGAG
AATTCAAACT TTCGTATTGC AGCAATATTG GATGGACCTT GCGATTATAT TGACAAAGTC
GCAAATACTT TTGACGCTCC TTACATTCCT GAGCCTGTAA AAGTCCATAC TTTAGTAAAA
GCAGACAGAC AGTGTGCGAG CGTAGCTGCA GCTGCAGTTT TGGCAAAAGT TACTAGGGAT
AATCTTATGG TATCTCTTGC TAAAAATCCG AAATATGCAG CCTACGATTG GGCAAGTAAT
AAGGGTTACG GCTCTTTAGC TCATCGCAAT GCCATTAAAA AAGTAGGACC TAGCGATTTG
CATAGATTGT CTTGGCATTT ATAA
|
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| Protein sequence | MSNKSSNIPL VPSFKYEQDL LCEGYDWVIG LDEVGRGSLA GPVMVGAAVI GIKQVKENYM
PEGLADSKLL SEKRREELYE PLQKWCTTWA VGSCTNTEID EWGISYALGV AALKAISKVE
EDIKKLSFSV NANTRENTRE NSNFRIAAIL DGPCDYIDKV ANTFDAPYIP EPVKVHTLVK
ADRQCASVAA AAVLAKVTRD NLMVSLAKNP KYAAYDWASN KGYGSLAHRN AIKKVGPSDL
HRLSWHL
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