| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0347 |
|---|
| Symbol | |
|---|
| ID | 8709964 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 373412 |
|---|
| End bp | 374947 |
|---|
| Gene Length | 1536 bp |
|---|
| Protein Length | 511 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 646482463 |
|---|
| Product | ABC transporter, ATP-binding protein |
|---|
| Protein accession | YP_003373598 |
|---|
| Protein GI | 283782844 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAGA TTGGCAAAAT TATGAATACT TTAAAGAGCA ATGCAAAAAA AGTGCAATCC
TCAATTACAA GCGATATTAT CGACGCAAAG CACATCAGTC AAAGCTTCAC TTCTGACAGT
GGCACTACTC AGCACGTTTT GCACGATATT TCTTTCACTC TTCGCGAGGG TGAAATCGTG
GCAATATTGG GACGTTCTGG TGCTGGAAAA TCAACTTTTC TACGCACAAT GGCTGGTCTT
GTGCAGCCAA CAGAAGGCAC AGTAACATAT CGCGGACGCG AGCTGACAGG CCCAAACCCA
GGAGTTGCAA TCGTATTTCA AACCTTCGCT CTTATGCCGT GGCTTACAGT ACAAGACAAT
GTGGAACTTG GCTTGCGTGC TAGAGGTGTT AGTAAAGAAA AGCGTACTGA GCTTGCTTTA
GCTGCAATTG ATGCAATCGG TTTGGATGGC TTTGAAACAG CGTATCCTAA GGAACTTTCC
GGCGGTATGC GTCAGCGAGT TGGTATTGCG CGCGCGTTGG TGCTGAGACC AGATGCATTG
TTTATGGACG AGCCGTTCTC TGCTCTCGAT GTGCTTACTG CTGAAAACTT GCGTCAGGAA
GTTCTTAAGT TGTGGTCTAG CGAGGAGCGA GATATTAAGT CTGTGCTTAT TGTGACGCAC
AATATTGAAG AAGCTGTGCA AATGGCTGAT CGCGTTGTGG TTCTTGGATC TCATCCAGGT
CACTTAATTG CTGATGTGAA TGTTGATTTG CCTCGTCCTC GAGATAAGCA CAGTGCTGAA
TTTGAAGCGA TGGTTGATAA TTTGTATGCT ATTTTGACTG GTTCTGCTCC AGAAAGCACT
GCAGAGCAAG ACGCTTCCGA AGATGCTGAT TCTCAAGATC AAGCAAATAA TGCAACTAAT
GAAGATGCTG AAGATAACGA AGCTGCAGCA ATTGCAGATA TGCTTATTCA GCGCCACCAT
GACGATGAAG ATGAAGATAA GCAAAGTGAG GATGAAGCTG AAGCAGGTGA GACAAAGGCA
GAGCCTGTGG CTGTTCGTTT GCTTCCAAAC GCTACACCAG GTGGTATGGC TGGTTTGCTT
GACGTGATTT CTGAAAGCCC AGATGGTATT GATTTGGCTG ATTTGGCAGC TGATTTGTCG
TTTGAGATTG ATGATTTGTT CCCACTTGTT GATGCTGGCA CGATGCTTAA TTTGCTTACT
GCAGAAAATG GTCATATTAC TATCACTTCT GAGGGTGAAG AGTGGCATAA TGCCGATATT
TTGCACAGTA AGCAAGTTTT TGCTCGTCTT GCGATTGAAC ATGCGTCTCT TGTGCACGCA
ATTGATCAAG CTTTGAGTAG GAATCGTAAC GGAAAGCTTC GTGGCGAGCT GATTTTGGAT
TTGTTGCGCA GTAAGCACAC GGATGCTTTG GCGCGTCAAC AGTTTGATAT TGCAATTAGC
TGGGGTCGTT ACGGCGAGTT GTTTGATTAT GACGCTGATG ATGACGAGTT GACTCGTACA
GTTGAAACTG CTCCTCTCGA TGGAGTTGTG CGCTGA
|
|---|
| Protein sequence | MEKIGKIMNT LKSNAKKVQS SITSDIIDAK HISQSFTSDS GTTQHVLHDI SFTLREGEIV
AILGRSGAGK STFLRTMAGL VQPTEGTVTY RGRELTGPNP GVAIVFQTFA LMPWLTVQDN
VELGLRARGV SKEKRTELAL AAIDAIGLDG FETAYPKELS GGMRQRVGIA RALVLRPDAL
FMDEPFSALD VLTAENLRQE VLKLWSSEER DIKSVLIVTH NIEEAVQMAD RVVVLGSHPG
HLIADVNVDL PRPRDKHSAE FEAMVDNLYA ILTGSAPEST AEQDASEDAD SQDQANNATN
EDAEDNEAAA IADMLIQRHH DDEDEDKQSE DEAEAGETKA EPVAVRLLPN ATPGGMAGLL
DVISESPDGI DLADLAADLS FEIDDLFPLV DAGTMLNLLT AENGHITITS EGEEWHNADI
LHSKQVFARL AIEHASLVHA IDQALSRNRN GKLRGELILD LLRSKHTDAL ARQQFDIAIS
WGRYGELFDY DADDDELTRT VETAPLDGVV R
|
|---|
| |