| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0346 |
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| Symbol | |
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| ID | 8708897 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 371604 |
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| End bp | 373352 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646482462 |
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| Product | ABC transporter, permease protein |
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| Protein accession | YP_003373597 |
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| Protein GI | 283782843 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4986] ABC-type anion transport system, duplicated permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGTAT TTACAACTTC GCGCAAAGAA AGCGCAGGTG TGCAAGTCGA CGAGAACACT
CGTTTCTGGT CGGATATTAT TGTGTGCGTT GGCATTATTG CCGTTTTTGG CGTAACTGCC
TTCCTTATTC AGCGCATAAA TCAGCCGATT GGTCCAAGTG GCATACCATC TAAGGTATCC
ACGGACTTAA TCAATCTGCC TTACTACACT TTGCGCTCAG TATTTCGCAT GCTGATCGCA
TTAGTTGCAT CTCTTATATT TACTATTGTT TATGGCTCTC TTGCAGCTCG CAGTCGTAGG
CTTGGCAAGG TGCTTATTCC TCTTCTAGAT ATTTTGCAAT CAGTTCCAAT TCTTGGCTTC
CTTTCGGCAA CTGTCACTAT TTGGTTGGTA ATTTTTCCTG GATCAATGCT TGGTGTTGAA
GCCGCTTCGA TTTTTGCTAT TTTTACGAGT CAAGCATGGA ATATGACTTT TTCGTTCCAC
CGTTCGCTGC TCAGCGAGCC AAAGGAACTG GATGAGGCAG TTCGTAGTTT GCAACTCACG
CATTGGCAAC GTTTCTGGGT GCTAGACATG CCTAACGCAA TGATTCCGCT GCTTTGGAAT
TGCATGATGT CTGTTGGAGG CGGATGGTTC TTCCTTACAG CTTCGGAAAT GATTTCCGTA
AATAATCACA CTTACGCTCT TCCTGGCATC GGTAGTTTTG TGGCACAAGC TGCTGCCGAA
AATAAGCTTG GTCTTATTTG GTGGGCTATT GTGTCGATGG TGATTGTTGT TTTGGCACTT
GACTTCTTCT TGTGGAAACC GCTTACAGCT TGGGCTGAGC GTTTCCGCAT TACGCAAAGC
GCATCTGATA ATGAGCGTCA CAGTGCTATT TTGACTCTTA TTCGTCACTC TCATGCAGAT
GAAGTTATTA GTAAGCTGTT TTTGCCAATT CGCGAGTGGC TTGAAAAAGT AACGCGCCCA
TTCGGTCGCA CAGGCTCCAA GTGGCCTCAT AAGGCTGCTC AGCATAAGCT TGGTGATTGG
GTATTCAACG TTATTATGCT AATTATTGTG GCTGCTGGCG CCGCCCATAT GCTTTACTTT
GTGTATACAA CTGCAGGTTT GCATGAGTTC ATTACTGCAG GCATGCTTGG TGGCATCACT
TTTATGCGCG TTGCTGCGTT GATTTTAATA AGCTCGCTTA TTTGGGTTCC TGTTGGTGTT
GTAATCGGCA TGAATCCTAA GATTTCGCGT ATTATGCAGC CTATAGTGCA AATTCTTGCT
AGCTTCCCAG CAAACTTCAT CTTCCCGTTT GCTATGGCTT GGTTTATGTC TTGGCATATT
GATCTTGGTT GGGGAAGTAT TATTTTGATG GCTCTTGGTA CGCAATGGTA CATTCTGTTC
AATGTTATTG CAGGTGCTAG TGCTATTCCG GATGATTTGC GTGAAATGAC GCGCAGCTTC
CGCTTGGATC GTACTTTGCG ATGGAAGACG CTTATTTTGC CGTCTATTTT CGGTTCATGG
TGCACTGGCG GTATTACAGC TGCAGGCGGT GCTTGGAATG CTTCGATTGT GTCTGAGATT
GTGGAATATG GAAAGAACCA CATGGAAACT CAGGGTTTGG GTGCATATAT TACTAATGCA
ACTACTTTAG GAGATTCTGC GCGCACTTTA GTTGGCGTAA CTGTTATGAG CTTGATTGTT
GTTTTAAGCA ACCGATTATT CTGGTCGCCA ATGCAACGTA TTTCCGAAAA ACGTTACGTA
TTGAATTAG
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| Protein sequence | MTVFTTSRKE SAGVQVDENT RFWSDIIVCV GIIAVFGVTA FLIQRINQPI GPSGIPSKVS
TDLINLPYYT LRSVFRMLIA LVASLIFTIV YGSLAARSRR LGKVLIPLLD ILQSVPILGF
LSATVTIWLV IFPGSMLGVE AASIFAIFTS QAWNMTFSFH RSLLSEPKEL DEAVRSLQLT
HWQRFWVLDM PNAMIPLLWN CMMSVGGGWF FLTASEMISV NNHTYALPGI GSFVAQAAAE
NKLGLIWWAI VSMVIVVLAL DFFLWKPLTA WAERFRITQS ASDNERHSAI LTLIRHSHAD
EVISKLFLPI REWLEKVTRP FGRTGSKWPH KAAQHKLGDW VFNVIMLIIV AAGAAHMLYF
VYTTAGLHEF ITAGMLGGIT FMRVAALILI SSLIWVPVGV VIGMNPKISR IMQPIVQILA
SFPANFIFPF AMAWFMSWHI DLGWGSIILM ALGTQWYILF NVIAGASAIP DDLREMTRSF
RLDRTLRWKT LILPSIFGSW CTGGITAAGG AWNASIVSEI VEYGKNHMET QGLGAYITNA
TTLGDSARTL VGVTVMSLIV VLSNRLFWSP MQRISEKRYV LN
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