| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0336 |
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| Symbol | rnc |
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| ID | 8709482 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 363859 |
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| End bp | 364587 |
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| Gene Length | 729 bp |
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| Protein Length | 242 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 646482453 |
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| Product | ribonuclease III |
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| Protein accession | YP_003373590 |
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| Protein GI | 283782836 |
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| COG category | [K] Transcription |
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| COG ID | [COG0571] dsRNA-specific ribonuclease |
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| TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGAGATTAG ATGGCAATGA AACTCGCCCT GGAGACCCAA CACAGGAACT TTTAAACGCT
TTAGGCACAA CTATTTCGCC GGATCTTTTG GTAGAAGCAC TCACCCACCG CTCGTTCTCG
CACGAGCATC CTGGCACACG AAATTATGAG CGACTTGAGT TTTTGGGCGA TGCTGTGCTT
GAGTTAGTTT CCACAGAAAC GCTGTTTTCT GCACATCCAG ACATGACTGA AGGTCAGCTT
GCGAAGATGC GAGCGAAAGC TGTGTCTGAA TGGGCGCTTT CTGCTGTTGC GCGCGAAAAG
CTGCATGTTG GCGCGTATAT TCTTCTCGGT CGCGGAGAAA TGGAGCAGGG CGGAAATAAT
AAAGATTCAA TTTTGTGCGA TATTGTTGAA GCACTTATTG GTGCAACTTT TGTTGAACAT
GGAATTGATG AAGCTCGCAG AGTTGTGCAT CGTTTGATTG ACGACACTTT GGCGGAAGTG
CTAACTGAAG GACCAGCTCT CGATTGGAAG ACTTCGCTTA CTGTCAAAGC TCACGATATG
GGTTTGGAAG ATCCAGAGTA TCGAATGGCT GTTTCTGGGC CAGAATACGC TCCAGTATTT
GAAGCTCGCG CGGTTTTGGC ACATAAGGAT GGCGACGAAG TGTTGGGAGT CGGAAGTGGC
TCTAGCAAAC GAAAAGCGCA ACTCGCAGCC GCCGAAATCG CTTGGCACGC ACTCGACGCG
CGTAAATAA
|
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| Protein sequence | MRLDGNETRP GDPTQELLNA LGTTISPDLL VEALTHRSFS HEHPGTRNYE RLEFLGDAVL
ELVSTETLFS AHPDMTEGQL AKMRAKAVSE WALSAVAREK LHVGAYILLG RGEMEQGGNN
KDSILCDIVE ALIGATFVEH GIDEARRVVH RLIDDTLAEV LTEGPALDWK TSLTVKAHDM
GLEDPEYRMA VSGPEYAPVF EARAVLAHKD GDEVLGVGSG SSKRKAQLAA AEIAWHALDA
RK
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