| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0327 |
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| Symbol | |
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| ID | 8709592 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 354117 |
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| End bp | 355292 |
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| Gene Length | 1176 bp |
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| Protein Length | 391 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646482444 |
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| Product | endonuclease/exonuclease/phosphatase family protein |
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| Protein accession | YP_003373581 |
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| Protein GI | 283782827 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.552069 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTTTAG TATTGGCGTT TTTGTGGGTT ATATTTGTGC CGCTTCTTTT GTGGCAGCTG
ATGCGTTGGC TGCCAGCAGG TGCGGATAAA TATAACCCAC TTCCGTATGT TATTGCGTTG
CTTCCACTTG CAACTTACGT TGTGGGAGCA CTGTTTTTGT GTAATTTTGG CGCTTTTTTG
CTGTATACAT GCTGCGCAGA GAAAGTAACG AAATCGCTTA ATTTAGCACA ATCTTACGCG
AAATCTTACG GATATTTATG CGTTGCTTAC GCTGCGCTAT TTTTGATTTC GCTTAAGTCG
CATACGCCGT ACTGGTTTGA AAGATTGCGT AGGTTGCACG AAAGCAAATC GTCGCGCAAA
AGCTGCAAGG AACGGCATCA AGAAATACGC GTGATGACTC TTAACTGCAG ATATGGAAAA
GCGAGTGCAT CCGAAATAAT AGAAATAACG AAAAAATATC ACGTAAATAC GTTACTTTTA
CAAGAATTAA GCAAGTCTTT AGTAAAAAAT CTTGAAAAAC TTGGAATATA CGAAATTTTT
CCAACTTCGT GCGTAGGTGC GCAAAGTGAG CATAATAACG GCGGATTCAA CGCTATTTTT
ACGCAATATT CCGCGATTTC TACTTGCACT AATTCCGTAA AAATTGAAGC TGCAAGCGTA
CCAAGCGTTA CAACTTGCTT AGATTTTGGT GCAAATGAAA AAGTTTTGGT GAAATTTGCT
TCTGCACATC CAAAGTCACC GATGCGTGGG TGTGCTGCTT GGAGTAATGG AATTCGCGCA
CTTGCGACTA TTGATTCTAC TACTGATTCT TTCGCCGATT GCACTAACGA ATGCGCTGAC
GAATCTACTT CGAAAACTTG CGATTTAGCA ACTCTTACTA TTGTTACTGG CGATCTTAAT
TCCACAGTCG ACCACCCAAG CTTTCGCTCG CTTTTGAAAT ACGGATTTAC AGACGTTGCG
CTTTCGCTTG GAAAGCGTCT ACGCACATGG CCTACATGGC TTAAGTGGCC AAATCTTACA
CTTGACCATG TGCTATTTTG CGCAAAAAAC TGTAAATCTA ACACACTATG GCAAAAGAAT
GTAGTTGTCG ACAGCACTGA TCACTTAGCA TACATCGCAG CAATTGACCT ACAATCACTA
GATAAAAACG TCCAAGCGCG CAGGCATAAT AGATAA
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| Protein sequence | MILVLAFLWV IFVPLLLWQL MRWLPAGADK YNPLPYVIAL LPLATYVVGA LFLCNFGAFL
LYTCCAEKVT KSLNLAQSYA KSYGYLCVAY AALFLISLKS HTPYWFERLR RLHESKSSRK
SCKERHQEIR VMTLNCRYGK ASASEIIEIT KKYHVNTLLL QELSKSLVKN LEKLGIYEIF
PTSCVGAQSE HNNGGFNAIF TQYSAISTCT NSVKIEAASV PSVTTCLDFG ANEKVLVKFA
SAHPKSPMRG CAAWSNGIRA LATIDSTTDS FADCTNECAD ESTSKTCDLA TLTIVTGDLN
STVDHPSFRS LLKYGFTDVA LSLGKRLRTW PTWLKWPNLT LDHVLFCAKN CKSNTLWQKN
VVVDSTDHLA YIAAIDLQSL DKNVQARRHN R
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