Gene HMPREF0424_0326 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0326 
SymbolrpsP 
ID8708935 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp353530 
End bp354000 
Gene Length471 bp 
Protein Length156 aa 
Translation table11 
GC content53% 
IMG OID646482443 
Productribosomal protein S16 
Protein accessionYP_003373580 
Protein GI283782826 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0228] Ribosomal protein S16 
TIGRFAM ID[TIGR00002] ribosomal protein S16 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.679786 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGCAACCA AGATTCGTCT TAAGCGATTG GGCAAGAAGT TCTATGCCTT TTACCGTGTA 
GTCATTTCTG ATTCACGCAA CAAGCGCAAC GGTCAGTCCA TCGAAGAGAT CGGCGTTTAC 
GATCCAAACA AGCAGCCATC TATGATTCAG ATTGATTCTG AGCGCGCACA GTACTGGCTT 
GGCGTTGGCG CACAGCCAAC CGAACCAGTG TTGAAACTCT TGAAGATCAC TGGTGACTGG 
CAGAAGTTCA AGGGTCTCGA CGGTGCCGAA GGCACGTTGA AGACTTCTGA AGCTGGTCCA 
GACGCACAGG CTCGCGTTGA AGCTGTTGAA GCTGAAGCTC AGAAGCTGAA GGCCGCTAAG 
TCTGAAGCCG CTGCTAAGGC TCAGGCTGCA GCTGAAGCCG CTGCAAACGA AGCCGAAGAA 
GTCCCAGCTG AAGCTGCGGA AGCTGCCGAA GCCGAGGAAA AGGCTGAGTA A
 
Protein sequence
MATKIRLKRL GKKFYAFYRV VISDSRNKRN GQSIEEIGVY DPNKQPSMIQ IDSERAQYWL 
GVGAQPTEPV LKLLKITGDW QKFKGLDGAE GTLKTSEAGP DAQARVEAVE AEAQKLKAAK 
SEAAAKAQAA AEAAANEAEE VPAEAAEAAE AEEKAE