| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0324 |
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| Symbol | rimM |
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| ID | 8709470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 352693 |
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| End bp | 353292 |
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| Gene Length | 600 bp |
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| Protein Length | 199 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646482441 |
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| Product | 16S rRNA processing protein RimM |
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| Protein accession | YP_003373578 |
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| Protein GI | 283782824 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
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| TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.884603 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACGTGG CATTAGACCA ACAATCTTTT GACAACCCTC AGCAAAGTCG TAATGACCTG
CTGAGGGTTT GTCGTATCGG TAAAGCCCAA GGTTTAAAAG GCGAAGTTAC TGTACAAATT
TTTACAGATG AGCCTTACGA ACGTTTTGAG CCAGGAAATG TATTGTGCAC TGCAGACGGC
GAGCGCGAGT TCGTTATTGA GAACGCAAGA ACATTCAAAA ATCGTTGGAT TTTACTATTC
GAAGAATCAC AAAATCGCAA CGATGCGGAA GCACTTAATG GCACTGAATT GTATGTACAT
GCGGAAGATG CGCAAGAACT TGCTGCCGAA AATGCTTGGT ATATTAAGGA TTTAGTCGGT
TTACAAGCGC GCTTGTGCGA AGAAAATCAG CTTGGGCTGC CGGCTTGCAC TATTGGAAAA
GTTGTGGATG TGCTCGACGG TGCGCAATCT TTGCTAAAAA TCCGCTTGAA TAATCCGATT
GACGACGATA ATAAGACTGC GCTTGTGCCA TTTGTTGAGG CACTTGTGCC GGAAGTTGAC
GTTGCAAACG GGTATTTGAC TATTGATCCT CCGGGCGGTC TAATTCCGGG GCTTTCGTAG
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| Protein sequence | MNVALDQQSF DNPQQSRNDL LRVCRIGKAQ GLKGEVTVQI FTDEPYERFE PGNVLCTADG
EREFVIENAR TFKNRWILLF EESQNRNDAE ALNGTELYVH AEDAQELAAE NAWYIKDLVG
LQARLCEENQ LGLPACTIGK VVDVLDGAQS LLKIRLNNPI DDDNKTALVP FVEALVPEVD
VANGYLTIDP PGGLIPGLS
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