| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0302 |
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| Symbol | |
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| ID | 8709150 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 326633 |
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| End bp | 329089 |
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| Gene Length | 2457 bp |
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| Protein Length | 818 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482420 |
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| Product | peptidase, S9A/B/C familie, catalytic domain protein |
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| Protein accession | YP_003373557 |
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| Protein GI | 283782803 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1770] Protease II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.327018 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAATC AAGATTTTGC GAAGCCAAAA GCGGCAGAAC GCATACCGTC GACGCGTGAA
TTCCATGGCG ACACTTATAT AGACGAATAT GCTTGGATGA AAGATCGCAA TAATCCTAAG
CTTATGGAAT ACATCAATAG TCAAAATGCT TATACTGAAC AGCGTGTAAA GCACTTAGAA
AACTTGCGTT CTACATTATT TGACGAGTTG CGCTCAAGAG TTCAAGAAAC AGACATGTCT
GTTCCTGTGC GCATGAATAA TTACTGGTAT TACGTGCGCA CTGAAAAAGG CAAACAATAC
GCTGTGCAAT GCCGTATGAA AGTCAAAAAT AGTGACGATT GGAATCCGCC AACTATCGAC
AATTCTGCAA AACCTGGCAC AACTGATGGT GAAGAAATTT TATTTGATGC AAACCTTGAA
TCTGAGCACT CTGGTGGCAA GTTCTTTAGA GTCGGTGGAA TGGATTTGAG TACCGACGGT
TTGAGAATGC TGTACGGTGT CGACACTCAA GGCGATGAAC GCTTTAACTA TTTTATTCGT
GACTTTTCTA CAAAAACATG TTCTTGGTTG CAGTTAGAAG AATCGTGGGA AAATCTTGCT
TCTGCTTCAC TTTCTCCAGA TGGAAAATGG GTGTTTTATG TAAAGCTTGA TGATGCTTGG
CGTCCTTATC AAGTTTGGAG GCATAAGGTT GGCACTAGCG TTTCTAATGA TGTAAAAGTT
TTTGAAGAAA CTGACGAGCG ATTTTTTGTT GACGTGTATG AAAGTTTTGA CGAACGATAC
ATGATGATCA GCAGTAGTTC AAAGACTACG TCGCGCGTGC TTATGCTTCC TTTGAGCAAT
CCTGAAGGCG AATTCCGTAT GGTTATTGAG CCGGTTGAGG GGGTGGAATA CGATATTTCT
TTCGCTTGCT TTGAGAATGC TGGCGAAAAT GGTGAAGATA TTCCAATTGC GATTGTGTGC
CATAACGCTA AAAATCCTAA TTTTGAAATT GACATTATTG ATATGAGAGG AAATTCCGGC
AAGTTTGATG AGCATATAAC GTATAAGCTT TCGGATGGAG TATGTGTTGC GTCGGGTTCT
CCTTATGGTT GCGAGCAGGG AGATGCTTGG CAACAAGGTG CTGGAAGTGA GCCTATTACA
AAGCCTTATA ATTCGCCTCA AAATCCTGAA ATATTGCAAA ATGCAGTTGG ATTGAGCATA
AGCGGATTGT CAATGTACAA AAATTATGTG GCACTAGCTT ATCGTTCTCA AGGTTTGCCG
CATTTGGCTG TAATGAGCAA GAAGCGCGCT GTTGAAGATT TTTTGCAAGC AAAACCGTGG
CGTTTTTGCG AAGTGCGACC GCTTTCTTCC CAGCTTGCGA ATCAATTTAC GGATCAACTT
TCTTCTCAAC TTGTGGATCA AGCGCAAGCC GAATCACGTG CTGCGCTCGC AAATATTTCA
CAAGAAGAAA TCAACAATAA TCGCCTATTG AGTATTTCTA TGACTGGAAA TCCTTCGTAC
GAAGCTCCGC GTATGCGTTA CGCTTTTGGT AGTTATGCGA CTTTAGGTCA ACTTCGCGAG
TTGGATCCTT TAACAGGCGA AGATGTGTTG CTCAAGCAAG GTAAAATTTT AGGTGAATTT
AATGAGCGCA ATTATGCTGA AAAGCGCGTT TGGATTACTG CTCGAGATGG TGAGCGTGTG
CCAGTGTCTC TTGTGTGGCG TCCGGATAAA ATTTCTCAAA CTGACTCAAT GTTTATTACT
GGTTATGGAG CGTATGAAGT TAGTTCAGAC CCTACTTTTT CTGTCGGTCG CTTGAGTTTG
CTGGATCGCG GCGTGTTATA TGCGCAAGTG CATGTGCGAG GCGGCGGCGA AATGGGTCGT
GCGTGGTATG AACAGGGTAG GCGCGTCAAT AAAAAGCATA CTTTTGAAGA TTTTGCTGAT
GCCACGCGTG CTTTGCAAAA TGCTGGTTTT GCTTCCGCTT GTCATACTGT TGCAAACGGT
GGTTCAGCAG GAGGCTTGCT TATGGGTGCT ATAGCAAATA TGGCTCCGGA ATGTTATGCA
GGAATTGAAG CAGACGTGCC TTTTGTAGAT GCCCTTACGT CTATGCTCGA CTCTTCTTTG
CCGCTTACTG TAACAGAGTG GGATGAGTGG GGCAATCCAC TCGATGATCC TGAAGCTTAT
GCTTATATGA AATCGTATAC TCCTTACGAA AATGTGCCTT GCGTAAAAAT GGAAGATGGT
TGCAAAAAGT TAGCTGATTT TCCGAAAATC TTAATCACGT CCTCTATTCA CGACACGCGC
GTGCTTGTTA CGGAACCTTT AAAATGGCTC GCTAAATTGC AAGCTTCTGG AGTTGACGCA
ATTGCTCGTA TTGAAACTGA CGGTGGTCAC GGTGGCACTT CTGGCAGGTA CAGGCAATGG
CAGGAGTTAG CTTATGAAAA CGCATGGTGC CTGCATGTTA TGGGTATAAA CAGTTAG
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| Protein sequence | MNNQDFAKPK AAERIPSTRE FHGDTYIDEY AWMKDRNNPK LMEYINSQNA YTEQRVKHLE
NLRSTLFDEL RSRVQETDMS VPVRMNNYWY YVRTEKGKQY AVQCRMKVKN SDDWNPPTID
NSAKPGTTDG EEILFDANLE SEHSGGKFFR VGGMDLSTDG LRMLYGVDTQ GDERFNYFIR
DFSTKTCSWL QLEESWENLA SASLSPDGKW VFYVKLDDAW RPYQVWRHKV GTSVSNDVKV
FEETDERFFV DVYESFDERY MMISSSSKTT SRVLMLPLSN PEGEFRMVIE PVEGVEYDIS
FACFENAGEN GEDIPIAIVC HNAKNPNFEI DIIDMRGNSG KFDEHITYKL SDGVCVASGS
PYGCEQGDAW QQGAGSEPIT KPYNSPQNPE ILQNAVGLSI SGLSMYKNYV ALAYRSQGLP
HLAVMSKKRA VEDFLQAKPW RFCEVRPLSS QLANQFTDQL SSQLVDQAQA ESRAALANIS
QEEINNNRLL SISMTGNPSY EAPRMRYAFG SYATLGQLRE LDPLTGEDVL LKQGKILGEF
NERNYAEKRV WITARDGERV PVSLVWRPDK ISQTDSMFIT GYGAYEVSSD PTFSVGRLSL
LDRGVLYAQV HVRGGGEMGR AWYEQGRRVN KKHTFEDFAD ATRALQNAGF ASACHTVANG
GSAGGLLMGA IANMAPECYA GIEADVPFVD ALTSMLDSSL PLTVTEWDEW GNPLDDPEAY
AYMKSYTPYE NVPCVKMEDG CKKLADFPKI LITSSIHDTR VLVTEPLKWL AKLQASGVDA
IARIETDGGH GGTSGRYRQW QELAYENAWC LHVMGINS
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