| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0296 |
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| Symbol | rpiA |
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| ID | 8709034 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 317840 |
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| End bp | 318538 |
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| Gene Length | 699 bp |
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| Protein Length | 232 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646482414 |
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| Product | ribose 5-phosphate isomerase A |
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| Protein accession | YP_003373551 |
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| Protein GI | 283782797 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0120] Ribose 5-phosphate isomerase |
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| TIGRFAM ID | [TIGR00021] ribose 5-phosphate isomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGATAAAG CACAACAAGA CGCGCTTAAA AAAGCAGCAG GCATTGAAGC CGCAAAGATT
GTAAAGAATG GAATGATGGT TGGTCTTGGC ACCGGCTCTA CAGTGCGCTT CTTGGTTGAC
GAGCTTGGTC GCAGAGTTAA GGAAGAAGGC TTGAGCTTCA CAGGAGTCAC CACTTCTCGT
CGCACACAAG AGCAAGCAGA AGGCTACGGC ATTAAGATTC TCGACATTAA CGAAGTGGAT
CACATTGACG TTACAATCGA TGGTTCTGAC GAAGTTGACA AGAATTTCAA CGGTATTAAA
GGCGGCGGCG CAGCTCTTCT TTGGGAAAAG ATTGTAGCTA TTAATTCCGA TCGCATTGTG
TGGATTGTTG ACGCAAGCAA GGTAGTCGAC ACGATTGGCA AGTTCCCACT TCCTGTTGAG
GTGATTCCGT TTGGATCTGC TCAGGTGATT CGTAAGTTCG AAAAGCGCGG ATATAAGCCA
GTTTTGCGTC TCGATGCTGA CGGCAAGGAA GTACGCACTG ACGAGAACAA CTTTGTGGTT
GATTTGCATA TGGAGCGCAT TGAGCATCCA CAGGAGTTGG CGAAAGATTT GATTGAAACT
GTTGGCGTTG TGGAACACGG CTTGTTCTTG AACATGGTTG ACACTGTGAT CGTCGGCGAC
CCTAACGGTC CTCGCACGCT TACCAACCCA AATAAGTAG
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| Protein sequence | MDKAQQDALK KAAGIEAAKI VKNGMMVGLG TGSTVRFLVD ELGRRVKEEG LSFTGVTTSR
RTQEQAEGYG IKILDINEVD HIDVTIDGSD EVDKNFNGIK GGGAALLWEK IVAINSDRIV
WIVDASKVVD TIGKFPLPVE VIPFGSAQVI RKFEKRGYKP VLRLDADGKE VRTDENNFVV
DLHMERIEHP QELAKDLIET VGVVEHGLFL NMVDTVIVGD PNGPRTLTNP NK
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