Gene HMPREF0424_0292 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0292 
Symbol 
ID8709631 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp314091 
End bp314648 
Gene Length558 bp 
Protein Length185 aa 
Translation table11 
GC content43% 
IMG OID646482410 
Productisochorismatase family protein 
Protein accessionYP_003373547 
Protein GI283782793 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1335] Amidases related to nicotinamidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTAAAG AAGACGAATG GTTAGTGGTA ATCGACAGAC AGCGCGTTTT TTGCGAAAGT 
GAGTGGTCGA CTTGGGCGTG TGCAGATCAC ACTTACGATT CAACAACAGA AGCTTTTACA 
AAACTTGCAA AAGCTTATGG TAATCGAGTA ATTTACACGC GCTATGTAGC ACCGCTTAAG 
CCAGAAAACG CTTGGGTTGA CTATTTTAAA GATTGGCCAC AATTCCTCGT AAAACCTGAT 
GACCCAATGT ATGACTTCAC TCCAGAAACA GCAGAACTTG CGGAAGGTCA CACTGTAGTT 
ACTTGCGAAA CTTTCGGAAA GTGGGGTAGG AAACTTAAGG CTGCATTAGG CGAATGTCGC 
AAAATAACAA TTTGCGGAGT TGCAACAGAT TGTTGCGTAT TAACAACTGC TTTAGCTGCA 
GCGGATAATG GCGTTGCTGT GCGTATTGCA GAAGATGCTT GTGCAGGAAG CACGCCGGAA 
AATCATAAGC TAGCTCTTAA AACTATGGAG CTTTTTACAC CGCTTATAAC AGTGTGCAGC 
ACAAGCGAAA TTCTTTAA
 
Protein sequence
MIKEDEWLVV IDRQRVFCES EWSTWACADH TYDSTTEAFT KLAKAYGNRV IYTRYVAPLK 
PENAWVDYFK DWPQFLVKPD DPMYDFTPET AELAEGHTVV TCETFGKWGR KLKAALGECR 
KITICGVATD CCVLTTALAA ADNGVAVRIA EDACAGSTPE NHKLALKTME LFTPLITVCS 
TSEIL