| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0287 |
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| Symbol | truB |
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| ID | 8709817 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 307702 |
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| End bp | 308805 |
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| Gene Length | 1104 bp |
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| Protein Length | 367 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646482405 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_003373542 |
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| Protein GI | 283782788 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGCATAC CAGATTCAGG ATTACTGCTT GTAGATAAGC CGCAAGGTGT TACAAGTCAC
GATATTGTTG CATGCGCTCG TCATTTGTTG CATACAAAGC GAGTTGGGCA CGCAGGAACG
CTTGATCCTA TGGCAACAGG ATTGCTAATC ATAGGTTTTG GCAACGCAAC GCGACTTTTA
AATTACATGT TGGGGCACAA TAAAACCTAT GAAGCAGTAA TCCGCTTAGG AGAAGCAACT
ACTACTGATG ATGCAGAAGG TGAAATTCTT CCGGATGACG CATTAAATAT AGGTCCGGGG
GTTCACGTCG CTAATAAAGA CATGTCTTTT GAAAAGTCAC TGTCTTTTGA GCGAATTAAG
CAAGTTGTTA GCGAAAATTT AGTAGGCAAA ATTATGCAAG CTCCTACTGC TTTTTCTGCT
ATTAAAATTA ATGGTCAACG CGCTTATGAT TTAGCGCGCG AAGGAAAATC AGTAGAGATT
GCTCCTAGAG AGATATTTGT TAGTGATTTT TCAGTGAGCA ATCCTCGAAT TACTAGGGGA
GTGAGTGGGA AACTCGTATG CGATATATCT GCAAAAGTTT CTTGCAGTAG TGGAACATAT
ATTCGCGCTT TAGCTCGTGA TTTAGGTCGC TTACTAGGAG TTGGTGGACA TCTTACTCAG
CTTCGTCGCA CTAGCGTTGG TGATTTTTCG GTTACTGATT CGCGAGTTCT TAAACTTCGC
TCGCAAATGC GAGAATTTAC TGATCGCAAT GGAGTATTGC AGCATCGCTC AAAAGCAGTT
CCTAGTGACG ATTTTGACGC AAATAATATG CTTCCTAAAA TTTGCTTAAA TATGATGGAT
GCAGCTTCGC ATTCGCTTCC AACTTTAAGC ATTGATGAGA ATCAAGCTAA AGACTTGCGT
TTTGGGCGCT GGATTGAGCT TAAATCTGGC ATAAATTACG AAAATTATCC TGCAATAGCG
TACGTTCCAA ACGCAAATAC TGAGGAATGT GACGTTGTTG CAGTAGTTGA ATTGACAAAA
AATATAAAAA GTAATCAAAT CAAACCAATT GTGGTATTTC CGGCAAGCGA GAAGACTGGT
AAACTAGATA AGTATTTAAA ATAA
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| Protein sequence | MCIPDSGLLL VDKPQGVTSH DIVACARHLL HTKRVGHAGT LDPMATGLLI IGFGNATRLL
NYMLGHNKTY EAVIRLGEAT TTDDAEGEIL PDDALNIGPG VHVANKDMSF EKSLSFERIK
QVVSENLVGK IMQAPTAFSA IKINGQRAYD LAREGKSVEI APREIFVSDF SVSNPRITRG
VSGKLVCDIS AKVSCSSGTY IRALARDLGR LLGVGGHLTQ LRRTSVGDFS VTDSRVLKLR
SQMREFTDRN GVLQHRSKAV PSDDFDANNM LPKICLNMMD AASHSLPTLS IDENQAKDLR
FGRWIELKSG INYENYPAIA YVPNANTEEC DVVAVVELTK NIKSNQIKPI VVFPASEKTG
KLDKYLK
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