Gene HMPREF0424_0286 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0286 
SymbolrbfA 
ID8708948 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp307099 
End bp307653 
Gene Length555 bp 
Protein Length184 aa 
Translation table11 
GC content46% 
IMG OID646482404 
Productribosome-binding factor A 
Protein accessionYP_003373541 
Protein GI283782787 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0858] Ribosome-binding factor A 
TIGRFAM ID[TIGR00082] ribosome-binding factor A 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGGAA CGAATCCTAG AGCTGCACGT ATTGCAGCAT TAATTCAGCG CGTAATCGCT 
TCTAATATGG AATCGCATTT GCATGATAAG CGTTTGGCGA GTGTGACTAT TACGGAAGTG 
CGCGTTACGA ACGATTTGCA AATTGCAAAG GTTTACTGGA CGCAACTTGG TCACGAAGGT 
AAAGAGCAGG GTGAGCGTCA GCGTGCAGCA CAAGCTTTGC AGCAGGCTCA CGGTCGACTG 
CGCTCTTTGG TCGGTGCAAA AGCTGGATTG CGTTTGACTC CCCAATTGCA ATTTATTTAT 
GACGAAGTGC CATCTGAAGC GCACGAAATT GAGGATATTC TTGTTGCAGC TCGTCATCGT 
GATGAAGAAT TAGCTAAATT GCGTGAAAAT GCTAAGTATG CTGGCGATGT CGATCCATAT 
AAGAAGCCGC GCGAAGTTGA AGAATCTGAC GATGACTTTG ACGATGATAA TTTCGACGAC 
GACGATTTTG ACGACGACGA TGACTTTGAA AGCGACGACT TTGAAGGCAC GTCTGAATCG 
TCTGACAACA ATTAA
 
Protein sequence
MAGTNPRAAR IAALIQRVIA SNMESHLHDK RLASVTITEV RVTNDLQIAK VYWTQLGHEG 
KEQGERQRAA QALQQAHGRL RSLVGAKAGL RLTPQLQFIY DEVPSEAHEI EDILVAARHR 
DEELAKLREN AKYAGDVDPY KKPREVEESD DDFDDDNFDD DDFDDDDDFE SDDFEGTSES 
SDNN