| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0285 |
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| Symbol | infB |
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| ID | 8709621 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 304232 |
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| End bp | 307096 |
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| Gene Length | 2865 bp |
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| Protein Length | 954 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 646482403 |
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| Product | translation initiation factor IF-2 |
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| Protein accession | YP_003373540 |
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| Protein GI | 283782786 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0532] Translation initiation factor 2 (IF-2; GTPase) |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00487] translation initiation factor IF-2 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTTAAAA AGCGCGTGTA TGAACTGGCC AAAGAATTTG GTGTAGACAG TAAAACCGTG
TTGGAGCGTT TGAAGAGCAT GGGCGAATTT GTTAAGTCTG CTTCTTCAAC AGTTGAGGCT
CCAGTAGTTC GTCGTTTGCA AACAGCGTTA GCATCTGACG GAAATAAGTC CGAAAAGGCA
TCTAGTGCAA GTAAGCCTGC TGCGCCAAAA GCTAAGCCTC AAGCTAAGCC GCAGGCTAAA
CCTCAAGCTA AAGATTCGTC ACACAGTGAT TCTGTAGCTG GCTCTTCTGC TAACCAGCCT
GTGCACAACA CAGCTTCTCA TTTTGTTCCA AAGCCGGGTG CAAATCATAC TCGTTCAAAC
AATCCTTCGC GTTCTAATGC TGCTGCCGGC GAAAATAGAA AAAATGATCG TCGCAATGAT
AATCGTGATA ATCGCGGCGA ATCGCGACAG CAAGCTCAAG GTCAATCTCA CTCAGATCGT
TCACAGATGC CTCCTCGCCC TCGTCCGCAC CAGAATGCAC AAGGTGCAGG CGCATCTGCT
CCACGTCCTG GTAATAATCC GTTTAGCCGT AAGCAAGGTA TGCGTGCTCC TACACCTGGA
GATATTCCAC GTCCTCATCC GATGTCTCGT CCTGGTGCTG AAAATGGCCG CGGTGGTCGT
CCAGGTCAAG CTGGCTCTGG ACCTCAAGGT TCGCGTGGTG AACGTGCAGA ACGCGGTGGC
CGCTCGCGTG GTGGCCGCTC TGGTCAAGGT GGCGCACGCT CATCGCAGTG GTCGGGTCAG
CGTCGTGGTC AAGGTGGCGC AGGTGCTGGC TCTGGTGCAT CTTCTCGCCC ATCTGCAGAA
TCTCGTTTTG CATCTCAAGG AGCTAGCTTC CAGGCTGCTG CAGCAGGCGC ACCTAATGGT
GGTCCATCGC GTGGCGGCGG TCGCGGTCGT GCAGGAGCTG CAGGCGCATT CGGTCGTCAA
GGTGGTAAAT CTTCTAAGGC TCGTAAGAAT CGTTTAGCGA AACGTCGTGA ATACGAAGAG
CTTAAAGCAC CAGTGATTGG CGGCGTGCGT ATTCCTTCTG GTAACGGCGC TACGATTCGC
TTGCGTCAAG GCGCAACTCT TTCTGATTTG GCGGAAAAGA TTGATGTAAA TCCAGCAGCT
TTGGTAACTG TGCTCTTCCA CTTGGGAGAA ATGGCAACAT CTACACAATC TTTGGATGAA
TCAACATTCC AAATTTTGGG TGAAGAAATC GGCTGGAATA TCAGCATTGT TTCTGCTGAA
GAAGAAGATA AAGAGCTTTT GCAGCAGTTT GACATCGATT TGGACGAAGA AGAGCTGCAA
GAAGATGACG ATTTGCAATC TCGTCCGCCT GTTGTTACTG TTATGGGTCA CGTCGATCAC
GGTAAAACTC GCTTGCTTGA TACCATCCGT AAGTCGAATG TTATCGATCG CGAAGCAGGT
GGCATTACTC AGCGTATCGG TGCTTATCAA GTAACTGTAA ATCTTGAAGG AAAACCTCGT
AAGATTACGT TCCTCGATAC TCCAGGTCAC GAAGCGTTTA CTGCTATGCG TGCTCGCGGT
GCTGAGCTTA CAGACGTTGC AATTCTTGTT GTTGCAGCAG ACGACGGCGT AATGCCTCAG
ACTGTTGAAG CTATTAACCA CGCTCAAGCT GCTCATGTGC CAATTGTTGT GGCTGTGAAC
AAGATTGATG TTGAAGGTGC TAATCCTGAA AAGGTTCGCG GTCAGCTTAC AGAATACGGT
TTAGTTGCTG AAGAATACGG CGGCGACACC ATGTTTGTGG ATATTTCTGC AAAGCAGGGC
ACTAACGTCA ATAAGCTTCT TGAAGCTGTG TTGTTGACTG CTGACGCTGA GCTTGATCCT
AAGGCAAATC CAAATATGGA TGCTCGCGGT GCAACTATCG AAGCTCGACT CGATAAGGGT
CGTGGTGCTG TTGCTACTGT TCTTGTGCAG CAAGGTACTC TTCACATTGG TGATTCTATT
GTTGCTGGCA CTTCTTATGG CCGTGTGCGC GCTATGCTTG ACGAGAACGG CAAGCATTTG
CAGGATGCGG CTCCTTCCAC TCCTGTTCAG GTGCTTGGTT TAACTTCTGT TCCAACCGCT
GGCGACTTGT TCTTGGTTAC TTCGGACGAC CGTTCTGCTC GTCAAATTGC TGAAAAGCGT
GCAGCTACAG AGCGTGCAGC TCAGCTTGCT AAGCGCCGCA AGGTTGTGTC TCTTGAAAGC
CTTAAGGAAC AGTTCGCTAA GTCTGAAGTT GACATGCTGA ACATCGTTAT TAAGGGCGAT
TCTTCTGGTT CTGTTGAAGC TTTGGAAGAT TCCTTGATGA AGATTGAGGT CTCTGAGGAA
GTTGGCATCC AGGTTATTCA CCGCGGTGTT GGTGCAATTA CTCAGAATGA TGTGAACTTG
GCAACTGTCG ATAAGGCTGT GATTATTGGC TTCAACGTGC GTCCAAACCG TCAAGTTGCT
GATTTGGCAG ACCGTGAAGG CGTGGAAGTT AAGTACTACT CAGTTATTTA CAAGGCAATC
GAAGATATCG AAGCTGCTTT GAAGGGTATG CTTAAGCCAG AATTCGAAGA AGTTGTTACT
TCGCATTCCG AAATTCGCGA AATCTTCCGT TCTTCCAAGT TCGGCAATAT TGCTGGTGTT
ATGGTTCAAG ATGGCGAAGT CAAGCGCGGT ACGAAGTGCC GTATTTTGCG CGACGGCGTT
GCTACAGTCA ACGACCTGGA GATTTCCAGC TTGCGTAGGT TTAAGGATGA CGTGCAATCC
GTTAGCGAAG GTTACGAAGC TGGTATTAAT CTCGGCAGCT TCAATGACAT TGAGCTTGGC
GATATAATCG AAACCTTTGA AATGAAGCAG ATTGAGCGCA AGTAA
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| Protein sequence | MVKKRVYELA KEFGVDSKTV LERLKSMGEF VKSASSTVEA PVVRRLQTAL ASDGNKSEKA
SSASKPAAPK AKPQAKPQAK PQAKDSSHSD SVAGSSANQP VHNTASHFVP KPGANHTRSN
NPSRSNAAAG ENRKNDRRND NRDNRGESRQ QAQGQSHSDR SQMPPRPRPH QNAQGAGASA
PRPGNNPFSR KQGMRAPTPG DIPRPHPMSR PGAENGRGGR PGQAGSGPQG SRGERAERGG
RSRGGRSGQG GARSSQWSGQ RRGQGGAGAG SGASSRPSAE SRFASQGASF QAAAAGAPNG
GPSRGGGRGR AGAAGAFGRQ GGKSSKARKN RLAKRREYEE LKAPVIGGVR IPSGNGATIR
LRQGATLSDL AEKIDVNPAA LVTVLFHLGE MATSTQSLDE STFQILGEEI GWNISIVSAE
EEDKELLQQF DIDLDEEELQ EDDDLQSRPP VVTVMGHVDH GKTRLLDTIR KSNVIDREAG
GITQRIGAYQ VTVNLEGKPR KITFLDTPGH EAFTAMRARG AELTDVAILV VAADDGVMPQ
TVEAINHAQA AHVPIVVAVN KIDVEGANPE KVRGQLTEYG LVAEEYGGDT MFVDISAKQG
TNVNKLLEAV LLTADAELDP KANPNMDARG ATIEARLDKG RGAVATVLVQ QGTLHIGDSI
VAGTSYGRVR AMLDENGKHL QDAAPSTPVQ VLGLTSVPTA GDLFLVTSDD RSARQIAEKR
AATERAAQLA KRRKVVSLES LKEQFAKSEV DMLNIVIKGD SSGSVEALED SLMKIEVSEE
VGIQVIHRGV GAITQNDVNL ATVDKAVIIG FNVRPNRQVA DLADREGVEV KYYSVIYKAI
EDIEAALKGM LKPEFEEVVT SHSEIREIFR SSKFGNIAGV MVQDGEVKRG TKCRILRDGV
ATVNDLEISS LRRFKDDVQS VSEGYEAGIN LGSFNDIELG DIIETFEMKQ IERK
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