Gene HMPREF0424_0284 details

Gene Information

• Locus tag: HMPREF0424_0284
• Symbol: nusA
• ID: 8708838
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Gardnerella vaginalis 409-05
• Kingdom: Bacteria
• Replicon accession: NC_013721
• Strand: +
• Start bp: 302831
• End bp: 303913
• Gene Length: 1083 bp
• Protein Length: 360 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 646482402
• Product: transcription termination factor NusA
• Protein accession: YP_003373539
• Protein GI: 283782785
• COG category: [K] Transcription
• COG ID: [COG0195] Transcription elongation factor
• TIGRFAM ID: [TIGR01953] transcription termination factor NusA

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 29
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGAATTGG ATTTGGCGGG AATGCATCAG CTTGCGGCAC AGCAGGGGAT TAATGCCGAG 
GAGCTGGACG AGGCGCTCGC CGAGGCCTTG CGTCTTGCGT ATATGAAAAC CGCTCATCCT 
GCAAAGCATG TGCGAGTTGA ATTGGACGAA CGTGCAGGTT CGTTCACTGT GTGGGCTAGG 
GATGAAATTC CTGGTAAACC TACTGAAGAT AACCCGTATC CAGCTCCAAC GCTGGGAGAG 
GAGTATGACG ATACTCCGCG TGATTTTGGT CGTTTAGCTG CTGCGACGGC TCGTCAAGTT 
ATTAGTCAAA TTTTCCGTAA AGCTGAAGAT GATCGCGTAT TTGGTGCGTT TTCTGGTCAA 
AAAGGCAAAC TTATCAACGG CATCATTCAA CAAGACGCAA AAGATAACAC TAACATCCAC 
GTTGCTGTTG GAGATGTTGA AGCTATTTTG CCGCGTCGCG AGCAGGTTCC AGGTGAACGT 
TACCGCCATG GTGAGCGTAT TCGCGTATAT GTCGTAAATG TTGCGCGTGG TCTGCGTGGT 
CCAGAAATTG TTGTTTCACG TTCACATCCT GAATTAGTTC GTCGTCTTTT TGAGCGAGAA 
GTGCCGGAAC TTGTTTCTGG AGCAGTTTCT ATTATGTCGA TTGCACGTGA AGCCGGAGCT 
CGCACAAAGA TTGCTGTTAG AGCTAATACT GAAGGTGTGA ATCCAAAGGG TGCTTTAATT 
GGTCCTGGCG GTTCACGCGT GCGTGCTGTA ATGGAAAACT TGGGTCAAGA GAAAATTGAT 
ATTGTCGATT GGTCGTCTGA TCCAGCAAAG TTTGTTGCTG CTGCTCTTTC GCCTGCTACT 
GCTACACAAG TGCAAGTAGT GAGTGAAAAG AATCAAACTG CAGTTGCTTT TATTCATGAT 
GCTCAGCTTT CTCTTGCTAT TGGTAAAGAA GGTCAGAACG CTCGTTTGGC TGCAAAGTTG 
ACTGGTTGGA AGATTGGTAT TGAGTCTGCG GAAGAGCATG CTAAGAAGGT TGCTGCAGCT 
CAAGCACAAA ATGCTCAGCC TGCTTCAGCT GATTTGAATA ATAACGCATC TGCTGCTGAA 
TAG 

 

Protein sequence

MELDLAGMHQ LAAQQGINAE ELDEALAEAL RLAYMKTAHP AKHVRVELDE RAGSFTVWAR 
DEIPGKPTED NPYPAPTLGE EYDDTPRDFG RLAAATARQV ISQIFRKAED DRVFGAFSGQ 
KGKLINGIIQ QDAKDNTNIH VAVGDVEAIL PRREQVPGER YRHGERIRVY VVNVARGLRG 
PEIVVSRSHP ELVRRLFERE VPELVSGAVS IMSIAREAGA RTKIAVRANT EGVNPKGALI 
GPGGSRVRAV MENLGQEKID IVDWSSDPAK FVAAALSPAT ATQVQVVSEK NQTAVAFIHD 
AQLSLAIGKE GQNARLAAKL TGWKIGIESA EEHAKKVAAA QAQNAQPASA DLNNNASAAE