| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0260 |
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| Symbol | rpsC |
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| ID | 8709691 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 286970 |
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| End bp | 287788 |
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| Gene Length | 819 bp |
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| Protein Length | 272 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 646482379 |
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| Product | ribosomal protein S3 |
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| Protein accession | YP_003373517 |
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| Protein GI | 283782763 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0092] Ribosomal protein S3 |
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| TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTCAGA AGATCAATCC TTTCGGCTAT CGCCTGGGCA TCACCGAGAA TCATCGCTCT
AAGTGGTTCT CTGACTCCAA CAAAGCTGGC GAGCGTTATC GTGACTTCGT CCTTGAGGAT
GACAAGATTC GCAAGGAAAT GAGCCATGAC CTCGAGCGTG CTGGCGTATC TCGTATCGTT
ATCGAGCGCA CTCGTGATCG CGTTCGTGTA GATATTCACA CTGCTCGTCC GGGTATTATC
ATCGGTCGTC GTGGCGCTGA AGCTGAGCGT GTTCGCGCAA AGCTCGAGAA GCTCACAGGC
AAGCAAGTAC AGCTCAACAT CTTCGAAGTG AAGAACGCTG CACTTGACGC TCAGTTGGTT
GCTCAGGGAA TTGCGGAGCA GTTGACAAAC CGTGTTACAT TCCGTCGTGC TATGCGTAAG
GCACAGCAAG ATGCAATGCG TGCAGGTGCC AAGGGTATCC GTATCAAGCT CTCCGGTCGC
CTTGGTGGTG CCGAAATGAG CCGCTCTGAG TTCTATCGCG AGGGTCGCGT TCCACTGCAG
ACCCTTCGTG CCTTGATTGA TTACGGCTTC TTTGAAGCTA AGACCACATA CGGTCGTATC
GGCGTAAAGG TCTGGATCTA CAAGGGTGAT ATGACCGAGC GTGAGTTCGA AGAGCAGCAG
GCTCAGCAGG GTAAGCGTGA AGGTCGTCGT GGTGGCGATC GTCGTCCACG TCGTGGCGCA
CGTCCTGCTA ACCAGCAGAA GGCTGCTGAA GCACAGGCTG AAAAGCCAGC TGAAGCTGCA
GCTGCTGAAG CTCCTGCCGC AACGGAAACG AAGGAGTGA
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| Protein sequence | MGQKINPFGY RLGITENHRS KWFSDSNKAG ERYRDFVLED DKIRKEMSHD LERAGVSRIV
IERTRDRVRV DIHTARPGII IGRRGAEAER VRAKLEKLTG KQVQLNIFEV KNAALDAQLV
AQGIAEQLTN RVTFRRAMRK AQQDAMRAGA KGIRIKLSGR LGGAEMSRSE FYREGRVPLQ
TLRALIDYGF FEAKTTYGRI GVKVWIYKGD MTEREFEEQQ AQQGKREGRR GGDRRPRRGA
RPANQQKAAE AQAEKPAEAA AAEAPAATET KE
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