| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0216 |
|---|
| Symbol | |
|---|
| ID | 8709885 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 241306 |
|---|
| End bp | 242730 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 646482335 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003373477 |
|---|
| Protein GI | 283782723 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGGCTG ATTTATTCCC AACCGCGTTG CGTGGGTACG ATAAAGACAA GGTAAATGAA
GCATTTGCAA ACTATGAGCG TACTATTTCT CGTCTGCGTG AACAAGTGCG TTCAAGCGAT
GAATCAATTT TGCAATTACA AGCGCAATTG CAAGAAGAAA AAAATAATGT AAAACGTGCA
AAAAGCGGAA ATACTTTTGC ATCCTTAGGT GCAAATGCGC AGCAATTGCT GGCATCTGCA
GAGCAGACTA GTTCTCAATT GCTTGAGCGC GCTAAGCAAG ATGCTGCATC AATTAAAAAG
AATGCACAAG CACAAGCTGG AACTTTGCTG AACAATGCAA AACTGGATGC TGCACATTTA
ATGCAAGAAG CACAAACTAA AGCAGACACA ATGCTTTCCA ATGCCACGCA AAAGTCGACA
CAACTTATGC AAGCTGCACA AGAAGATTCT GCACGTTTGC GCGATACTAC TGCTAAAGAT
GTGCAAGCTC AAAAAGACGC TGCAGAATTA GCTTTACAAA ACACTCAAGA AGAACATACG
AAGCGCATGG CTTCTGAGCG CGCTCAGCAA GAAAGCAGCA TTTCGCAACT TAAGTCGGAA
GCTGCGCAAA AAATTGCTGA GCAGCGTGCG GCTGCAAACG AAGAGATTGC ACGTGCTAAA
GCTGAAACAA ACGATCAGAT TGAATCTGCT CTTGCAGAAG CAAATAAAAA GCTTGCTGAT
ATGCGCGAAC ACGCTTCGAA GATGATGGCT GACGCACAGC GCAAAGCTGG CGAAATTACG
GATGCTGCTG CTGCTAAAGC TCAAGAAATT GCAGATGATG CTCAAGTTGA ACGCACGCGT
ACGTTAAGCC AAGTTAGTGC AGAAGTTGAG CAGATTCGAG CAGATATTGC TGCTCAACAG
GAGGAAGCTA CAAAGAAAGT CAATGCCTTG CTTTCTGGTT TGAAAGAGAA AGAAAGAGCA
GCTCAGGAAG AAGCAGATGC TTTGGTTGAT CGCGCAAAAA CTGTTCATCA AGAAGCTGAC
GAATATGCAG CGCAAACGCA TCAGGCTGCG GATAGTCAGG CTGCTGATAT TGTGCGCAAA
GCTATGCAGG AGGCAACTGC TCAGGTTGAA GAGCGTAGAG CTGCAGCGCA GCAAGAGCTT
GATGGCATGA CGACTCGATT AACCCAATTG CAGCATCGTG AGGCAACTAT TACGCAGCGC
GTTACGGAAT TGCGTTCGCT GTTTGCGAAT GCTTTCTCTG GATTTGATTT TGGGGATGCT
CAACAAAACC AACAAGTTGC GCAAGCTTCT GACGATAATG AGGATTCGTC GGATGTTCAA
TCTTCTGCAG ATGCGAAGCA GGCTCAGCGA GATGTTCAAG CTGCGTTGGC TGAATCTGAA
GAAGCTAACG AGTCTCAAGA AGACCAAGAC ACAGATAATC AATAA
|
|---|
| Protein sequence | MVADLFPTAL RGYDKDKVNE AFANYERTIS RLREQVRSSD ESILQLQAQL QEEKNNVKRA
KSGNTFASLG ANAQQLLASA EQTSSQLLER AKQDAASIKK NAQAQAGTLL NNAKLDAAHL
MQEAQTKADT MLSNATQKST QLMQAAQEDS ARLRDTTAKD VQAQKDAAEL ALQNTQEEHT
KRMASERAQQ ESSISQLKSE AAQKIAEQRA AANEEIARAK AETNDQIESA LAEANKKLAD
MREHASKMMA DAQRKAGEIT DAAAAKAQEI ADDAQVERTR TLSQVSAEVE QIRADIAAQQ
EEATKKVNAL LSGLKEKERA AQEEADALVD RAKTVHQEAD EYAAQTHQAA DSQAADIVRK
AMQEATAQVE ERRAAAQQEL DGMTTRLTQL QHREATITQR VTELRSLFAN AFSGFDFGDA
QQNQQVAQAS DDNEDSSDVQ SSADAKQAQR DVQAALAESE EANESQEDQD TDNQ
|
|---|
| |