Gene HMPREF0424_0198 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0198 
Symbol 
ID8708878 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp221600 
End bp222115 
Gene Length516 bp 
Protein Length171 aa 
Translation table11 
GC content37% 
IMG OID646482317 
ProductGtrA-like protein 
Protein accessionYP_003373462 
Protein GI283782708 
COG category[S] Function unknown 
COG ID[COG2246] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATATTA TGAAAAAGCT TATTGAACAG GTTGTAAAGT TTGGAATTGT TGGCATTATT 
GCCCTTATTA TTGACGTTGC GTTACTCAAT TTATTAATGC TTGCGCACTT AAATAATGTG 
GTTGCGGGTA CGATTTCTTT CGTAATCTCA CTTATCTTCA ACTATATTGC CAGTATGAAA 
TACGTCTTTA AACATCGTGA AGATATGGCA AAGTGGATGG AGCTTCTGAT TTTTGTTATT 
TCCGCAGTTA TAGGTTTGCT TATAAACGAT TTGATTATTT GGGCTAGTAC GTTAGGAATG 
GTTGAAAGCT TACGCGGATC TGCAGTATAC GTTTTGCGCA CAAATATAGG AAAACTTGTA 
GCTACTGTTG TTGTTGCTGT GTGGAATTTT GTTATACGAA AGTGGCTGCT CGATGATACT 
AAATCTCAAC AGCCTGGGTA TGTTGCGCAA GAAGATACGA GTTTTGCTCA CCGTTTGGGA 
ATGTGGTCGC TTAATCATAC AAAAAATCGC AAGTAA
 
Protein sequence
MDIMKKLIEQ VVKFGIVGII ALIIDVALLN LLMLAHLNNV VAGTISFVIS LIFNYIASMK 
YVFKHREDMA KWMELLIFVI SAVIGLLIND LIIWASTLGM VESLRGSAVY VLRTNIGKLV 
ATVVVAVWNF VIRKWLLDDT KSQQPGYVAQ EDTSFAHRLG MWSLNHTKNR K