Gene HMPREF0424_0187 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0187 
Symbolppa 
ID8709999 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp209173 
End bp209667 
Gene Length495 bp 
Protein Length164 aa 
Translation table11 
GC content48% 
IMG OID646482306 
Productinorganic diphosphatase 
Protein accessionYP_003373451 
Protein GI283782697 
COG category[C] Energy production and conversion 
COG ID[COG0221] Inorganic pyrophosphatase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGAAA CTTTTAACGT TGTGGTAGAG ATTCCACGCG GTTCTAAGAA CAAGTATGAA 
GTGGATCACG AAACTGGTCG CGTATTCTTG GATCGCACCC TTTTCACAGC TATGGGTTAT 
CCAGATGATT ACGGTTATAT TGATGGCACT TTGGGCGAAG ATGGCGATCC ACTCGACGCT 
CTTGTTATGA TTCCAAATTC TGTGTTCCCA GGATGCGTTG TTGAGTGCCG CGCTGTTGGC 
TTGTATCACA TGGTTGACGA AGCCGGTGGA GACGACAAGG TTTTGTGTGT TCCAGCGGAC 
GTTCGTTTCG ACGACATCAA GGATATCGAT GACGTGAACG AGTATCACAA GGCTGAAATC 
AAGCACTTCT TCGAGCAGTA CAAGGCTTTG GAACCAGGTA AGGAAGTTCT TCCTGGTGAC 
TTCTGGGCTG GCGTTGAGCA GGCTGAGAAG GAGATCGTTG CAGCTCGCAA GCGCTTGGAA 
GAAAGCGAAA AATAA
 
Protein sequence
MAETFNVVVE IPRGSKNKYE VDHETGRVFL DRTLFTAMGY PDDYGYIDGT LGEDGDPLDA 
LVMIPNSVFP GCVVECRAVG LYHMVDEAGG DDKVLCVPAD VRFDDIKDID DVNEYHKAEI 
KHFFEQYKAL EPGKEVLPGD FWAGVEQAEK EIVAARKRLE ESEK