| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0181 |
|---|
| Symbol | |
|---|
| ID | 8709230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 201312 |
|---|
| End bp | 202649 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 646482300 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003373445 |
|---|
| Protein GI | 283782691 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1373] Predicted ATPase (AAA+ superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGATA GAAAAATATA CAAAGAAATG CTGAAATGGA AGCATGAATA TGCGCCAAAT
TATGCGCTTT TTCTTAAAGG AGCAAGACGA GTTGGCAAAA CAACATTAGC TGAAAAACTT
GGCAAAGAAG AGTATAAGTC TTATATTCTT ATTCGTTTCG ATCAAACCGA AGAAGACATT
AAGCAACTTT TTATAAACAG TCTAAGAGAT TTAGATACTC TATTTAACAC AATACAGTTA
GCTTATAATA CCAGACTTTA TAAGCGAGAA TCTCTTATAA TACTTGACGA AATACAACTA
TTTCCGCAAG CTCGGCAAGC AATAAAAACT CTGCTTGAAG ACGCTCGCTA TGATTACATT
GAAACAGGCT CACTTGCTTC TATTACAAAG AAAAGCAAGG ATATTCTCAT ACCCTCAGAA
GAGTACACGC TAGAAGTACT TCCACTTGAC TATGAAGAGT ATTCATTAGC GAACAATAAC
AACATGATTT TCCCTACTAT TAAAGATCAC TTTGAATCAC TTAAACCTAT GGGCAGTATG
CACCAGAGCA TAATGAAGTC TTTTAGAGAG TACATGTTGG TTGGAGGAAT GCCACAAGCT
GTTCAAGCAT ATGTTGATAC AAAAGATTTT GCGAAGGTTG ACTTTGCTAA ACAACAAATA
ATCAATCTTT ATAAGCAAGA TATGCAAGAC CAGGAAGAAG AAAACCCTAG TTACGTAACT
AATTTTTTCG ATAGAATTCC AGCAGAGCTT TCCAAACATG ACAAACGTTA CATGCTATCT
CACGTAGATT CCAACGCGCG CATTAAAGAG TATAGGGATC CAATACGCTG GCTTGAAGAA
GCGATGATAG TAAACATTGC AAACAGCGTT GAAGATCCGA GTGTAGCTTT GAATCTATCT
ACTATCAATC CTTCTTTCAA ATGCTACATG ATGGATACAG GACTCTTAAC TTCGTTAGCA
TACAAAGATA AGCCTTACCT AGAAAACGAA CTTTATAAGG CAATTCTGCT AGACAAATTA
CACATTAATG AAGGAATGAT AATAGAAAAT ATTGTCTCAC AGTGCCTAAA AGCAAATGGA
CACAACGCGT ATTTTTACAA AAAAACAAAT ACCAATACCA AAAAGACAGT AATGGAAATA
GATTTTCTCT TAAGAAAAAA TAACAAGATT ATTCCGATAG AAGTAAAATC TGGCAGCAGT
AAAAATGTAA AGTCAATTAC AAACTTTATG GAAGCTTTTA GTAAAACCAG CAGCGAAGGA
ATCGTGCTTC ACCACGGAGA AATTAAGCGC GAAGGCAAAC TGCTTTACCT ACCGTACTAC
ATGGCTTCTG TATTGTAA
|
|---|
| Protein sequence | MFDRKIYKEM LKWKHEYAPN YALFLKGARR VGKTTLAEKL GKEEYKSYIL IRFDQTEEDI
KQLFINSLRD LDTLFNTIQL AYNTRLYKRE SLIILDEIQL FPQARQAIKT LLEDARYDYI
ETGSLASITK KSKDILIPSE EYTLEVLPLD YEEYSLANNN NMIFPTIKDH FESLKPMGSM
HQSIMKSFRE YMLVGGMPQA VQAYVDTKDF AKVDFAKQQI INLYKQDMQD QEEENPSYVT
NFFDRIPAEL SKHDKRYMLS HVDSNARIKE YRDPIRWLEE AMIVNIANSV EDPSVALNLS
TINPSFKCYM MDTGLLTSLA YKDKPYLENE LYKAILLDKL HINEGMIIEN IVSQCLKANG
HNAYFYKKTN TNTKKTVMEI DFLLRKNNKI IPIEVKSGSS KNVKSITNFM EAFSKTSSEG
IVLHHGEIKR EGKLLYLPYY MASVL
|
|---|
| |