| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0162 |
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| Symbol | |
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| ID | 8709710 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 183670 |
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| End bp | 184941 |
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| Gene Length | 1272 bp |
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| Protein Length | 423 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646482281 |
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| Product | hypothetical protein |
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| Protein accession | YP_003373426 |
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| Protein GI | 283782672 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4393] Predicted membrane protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.95694 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCAGAC TGTTTGTGGC AGTTATGCCT GGGCTGCTCC CTCTTGCGCT ACTCACAATG
GGATTAAGCA CATCGCTTAC TGTTGGCGAG GGGCGAGATA AGCCTCTGAG TGCACGTTGG
AGATTGTATG GGCTGTCTGC AGGCACAGTC GCAGCTCTTA TTTTTGCTAT ACTCCGCGCA
TCTGTGGTAA TTAATCAGCG AAACTTTATT AATATGCCGG CGTTGTGTAT TGCGGTTCCG
CTTGATATTG CTGCAATTAT TGTGGTTATT TTTTCACACA AAATAATAAA AAATTGGCGT
AATTGCCCGC TTTTAATGCA CATAAGTAAC GCGATTGGTG CATGTTGCTT AGCGTTTACT
GTGTTTTATG CTTTACCAGA TGTTATTTTG CAACTTACTA TTTTCGTAGA TTCAAGCACT
CCGCCTTTTA CATCAGACAT GTTACTTCGC GCGCTTGGTT TTGTGCTTGG CGTTATTGCT
GCTATCTGCT TAAGTCTTAT GGTGCGTTCT TTGCGCACTA CGTCTAACGC TATTTGCTTC
AAAATTGCTG TAGTTTTAAG CATGATTATT TTGCTAGTGC AGCACATAAC TTCACTTTTG
CAGATTATGC AAGGAAGCAT TCTGCTTTAT ATGGATGACT TTTCTTTCAG CGTGCTTGTT
TGGCTAATTA ATAACGCTCC ATTAATGATT ATGGCGCAAA TTAGCGTGTT CATGATTCCT
GCTGCTGCGT CTGTAATAAT CGGCTTTAAA ACGGCTGTAG TTGGTGAAAA TGCAGCAGAA
ATTCGCACGA AGCGAGCGTT TAAAAGGAAA TCTCGAAAGT CTGCGCTCGC AGCTCTTTTG
GCTGCTATCA CAGTAATACT TACGCTTACT GTAGGCGTAT CTATTATGAA TATTAAACCA
ACTCTTACGC CTCCAGAACC GTATGAATTG CACGATGGTG TTGCAACTAT TAATTACGTT
CAAGTTTCAG ATGGTCATTT GCATCGTTTC CAATACAAAG CAAAAGACGG CACTATTATG
CGTTTTATAA TCATTAAAAA GAATGGTGGA GCGTATGGCG TTGGATTGGA TGCTTGCGAA
AACTGCGGCG ATGCAGGCTA CTATGAAAAA GACGGTAAGA TTATTTGCCG TAAGTGCGAC
GTAGCAATTA ATTTGGCAAC TATCGGTTTT AAAGGTGGTT GCAATCCGAT TCCGTTCCCG
TATAAGGCTG GGCATGGCAA AATCACAATT CATACTGCTG ATTTAGACGT GCTCAGTTCG
CATTTTAAGT AA
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| Protein sequence | MLRLFVAVMP GLLPLALLTM GLSTSLTVGE GRDKPLSARW RLYGLSAGTV AALIFAILRA
SVVINQRNFI NMPALCIAVP LDIAAIIVVI FSHKIIKNWR NCPLLMHISN AIGACCLAFT
VFYALPDVIL QLTIFVDSST PPFTSDMLLR ALGFVLGVIA AICLSLMVRS LRTTSNAICF
KIAVVLSMII LLVQHITSLL QIMQGSILLY MDDFSFSVLV WLINNAPLMI MAQISVFMIP
AAASVIIGFK TAVVGENAAE IRTKRAFKRK SRKSALAALL AAITVILTLT VGVSIMNIKP
TLTPPEPYEL HDGVATINYV QVSDGHLHRF QYKAKDGTIM RFIIIKKNGG AYGVGLDACE
NCGDAGYYEK DGKIICRKCD VAINLATIGF KGGCNPIPFP YKAGHGKITI HTADLDVLSS
HFK
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