| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0154 |
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| Symbol | |
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| ID | 8709468 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 175667 |
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| End bp | 177004 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 646482273 |
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| Product | sensor histidine kinase/response regulator |
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| Protein accession | YP_003373418 |
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| Protein GI | 283782664 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.313173 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATATTA TTGCGTTTGT TGTACTTATA GGAAATTACG CTCCCGATAA AGAGATATCT
CCTTATAGCA TAGCAAAAGA GACGGGAGAA GCATTACAAT TATCCGCAAG TGGGGATTAT
GCATTATCAA AAAATATGTC TTCCAAATTG ACAAATTCTG GCGCATGGGC AATTTTGATT
GATAATAATA CGTTGAAAGT CGTATGGAAA ACAGAAAATG TCCCTGCAGA TATTCCAAAC
AACTATACTT TGTCTGATAT AGCTAATTTG AGCGTTGGTT ACATTGATGG TTATCCAACT
TACACTGGCA AAAATAAGGA TGGAGTTGTT GTAGTCGGAT TTCCGCACAA CAGCTTTTGG
AAACATACGC GACCAAGTTG GAACTACAGT TTAATCTTAA ATTTTCCGCA GATTGTTTTA
AGCGTATTAT TTATCAACAT TTTGCTGATT CTTGGAATTT ATTTAATAGC TAATATAAAA
CTACTAAAAT CAATTAATCC GATTACAAAA GGGATACAAC GTTTATCTAG TGGAGAAAGC
GTGCATATTC CAGAAACAGG AGCGCTTTCA GAAATTTCAT CTAATATAAA TTCTGCTTCC
GATATTTTGC AAATACAAAA AGAACAATTG AGGAAAAGAG AGACTGCAAG AGCAAATTGG
ATAGCTGGGG TTTCGCATGA TATTCGTACG CCGTTATCTA TGGTTATGGG ATATGCGGGA
CAGTTAGAAA ATTCTCTCCA TATTTTGGAA GAAGATCGTA AAAAAGCAAC GATGATTATT
AAGCAAAGTG TCAGAATGAA AAATTTGATT AATGACCTTA ATCTGGCTTC AAAACTTGAA
TACAATATGC AACCAATTAT GAAAAAAGAA GAAAATGTTG TTGCTGTTGT TAGGCAAGTT
GTTGTGGATT TTATGAATAT GGGTATGCAA GATGAGTTTT CGATTAAATG GGAAACGGAC
GCAGAATTGA CTGTTTGCAA TATTAATGTA GACAAAGATT TATTAAAACG AGCAATATCT
AATCTTATTC AGAACAGCAT ATCTCATAAT GAAAATGGGT GTACGATTTA TGTATCCGTT
GCTGCAAATA ATAATAATTG TATTATTTGT GTTGAGGATA ATGGTATAGG TGTTTCAGAT
GAAAAAATCG AAAAGCTTAA TCATGCACCG CACTATATGA TTTGCGATAC AAGTACTGCA
GAGCAACGGC ATGGTTTGGG TTTGCTGATT GTTCAGCAGA TTATTGGCGC TCATAATGGA
ACAGTTGATA TAAGTAGAAG CAAATACGGT GGGTTTAAGG TTGAGTTAAC AGTGCCAAGT
AAAAAATTTG AGTTATAG
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| Protein sequence | MNIIAFVVLI GNYAPDKEIS PYSIAKETGE ALQLSASGDY ALSKNMSSKL TNSGAWAILI
DNNTLKVVWK TENVPADIPN NYTLSDIANL SVGYIDGYPT YTGKNKDGVV VVGFPHNSFW
KHTRPSWNYS LILNFPQIVL SVLFINILLI LGIYLIANIK LLKSINPITK GIQRLSSGES
VHIPETGALS EISSNINSAS DILQIQKEQL RKRETARANW IAGVSHDIRT PLSMVMGYAG
QLENSLHILE EDRKKATMII KQSVRMKNLI NDLNLASKLE YNMQPIMKKE ENVVAVVRQV
VVDFMNMGMQ DEFSIKWETD AELTVCNINV DKDLLKRAIS NLIQNSISHN ENGCTIYVSV
AANNNNCIIC VEDNGIGVSD EKIEKLNHAP HYMICDTSTA EQRHGLGLLI VQQIIGAHNG
TVDISRSKYG GFKVELTVPS KKFEL
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