Gene HMPREF0424_0144 details

Gene Information

• Locus tag: HMPREF0424_0144
• Symbol: atpF
• ID: 8709711
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Gardnerella vaginalis 409-05
• Kingdom: Bacteria
• Replicon accession: NC_013721
• Strand: +
• Start bp: 165330
• End bp: 165872
• Gene Length: 543 bp
• Protein Length: 180 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 646482263
• Product: ATP synthase F0, B subunit
• Protein accession: YP_003373408
• Protein GI: 283782654
• COG category: [C] Energy production and conversion
• COG ID: [COG0711] F0F1-type ATP synthase, subunit b
• TIGRFAM ID: [TIGR01144] ATP synthase, F0 subunit b

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCATATG CAGCCGAAAC TAATAAACTG GCGTTGTTCT TGCCGGAGCC TTACGACGTT 
ATATGGTCGC TGGTTATTTT AGTTGTTCTT GCAGCGTTTT TCTACAAGTT CGTTATGCCT 
AAATTCCAGG CAATTCTCGA CGAGCGTGCA GAAAAAATTG AAGGTGGAAT GGCTAAGGCT 
GCTAATGTGC AGCGTGAAGC AGACGAGTTA AAGAGCCAGA TTGAAAACGA ACTTTCTCAA 
GCTCAAACTG ATGCTGCAAA GACTCGTGAA GAGGCTCGTG CGGAAGCTTC AAAAATTATT 
GGCGAAGCTA GACAACGTGC TGAAAAGGAT GCTGCGAAGA TTATCAGTGA AGCACAGCAT 
TCTATTGAGG CTCAGCATAA GCATGCCATG TCCAGCCTCC AAGGAGAGGT GTCGGTTCTT 
GCAGCAGCTT TAGCTGGCAA GATTCTTGCA TCCAAATTGG ATGACGATAC CGTCAGCTCC 
AAGATTATTG ATCATGTGAT CGATGAAGTT GGAGACACTA AAAATTCGGA TCAAAGCAAG 
TAA 

 

Protein sequence

MAYAAETNKL ALFLPEPYDV IWSLVILVVL AAFFYKFVMP KFQAILDERA EKIEGGMAKA 
ANVQREADEL KSQIENELSQ AQTDAAKTRE EARAEASKII GEARQRAEKD AAKIISEAQH 
SIEAQHKHAM SSLQGEVSVL AAALAGKILA SKLDDDTVSS KIIDHVIDEV GDTKNSDQSK