| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0111 |
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| Symbol | |
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| ID | 8708756 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 132800 |
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| End bp | 134005 |
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| Gene Length | 1206 bp |
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| Protein Length | 401 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646482232 |
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| Product | putative aspartate transaminase |
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| Protein accession | YP_003373378 |
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| Protein GI | 283782624 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAAG TAGCGAAACA TGCAATTTCA ATACCTCGTT CAGGTATTAG AGATGTATTT
GACCGTGTAG AACAAATACC AGACGCTATT TCACTATGCC TAGGAGAACC AGGCGAAACT
GCTTCCTCAC ACATTGTTGA AGCCGCGTGC AACTCATTAC GAGAGGGAAA AACAAAATAC
ACAGACGTTT TAGGCATACC AGAATTCCGC GAGGCAGCTG CAAATTATAC GAATAGAGTA
AAAGGTTTAA ACTACAACGC AGACACAGAA ATTCAAGCCG TTGACGGCGC TACTATTGGA
TTATATTTAG CTATTAAATC AGTAATAGAT CCGGGAGATG AGGTTATTAT TCCATCTCCA
TACTTCACAT CATACGATGC AGAAGTGCTA ATGTGCGAAG GAATTCCAGT AACTGTAGCC
CTAAAGCCAG AACATGGAAT GCATATTAAT GCAGCAGAAA TACGCAAAAC TATATCGCCA
CGCACTAAAG CCATCATTAT CAATTCTCCA TGCAACCCAA CCGGTGCTGT AACAACCGCA
GAAGAACTCG AAGAAGTTGC AAAATTATGC CAAGAATTTA ATCTTTGGGT AATTTCTGAC
GAAGTCTACC ATCCATTCGT ATTCGCAAGC AATCCAGAAA CTGAACCTTG CGGAAATGCT
GTAGCACCAT CTATTGCAGC AGCTGAAGGA ATGCACGAAC GAACCATTAT TGTAGAAAGT
TTATCGAAAA CTTACGCAAT GACAGGCTGG AGAATTGGAT ATATTCTTGC ACCAAGCCGA
GTTATTGAGC AAACCAGCAA AATTGCAGAA ATGATGCATT CTTCTGTAAA TTCTACCGCA
CAGTATGGCG GCGTAGCTGC ATTAACAGGT CCGCAAGATC ACGTGCGCGA AATGAGAGAA
GAATATCGCG CAAAACGTCA GCTTGTTATA GACGGATTGG CAAATTGCAA TGCATTGCGT
CTTATAGAGC CTCAAGGTGC ATTCTACGTT TTTGTTGACG TTCGACCAAC TGGTTTAAGT
TCAGAAGAAT TTAGCAAAAA ACTTTTAGAT GAAGAAAAAG TTGCTGTTGT GCCAGGAGAA
GCCTTTGGCG CAGAAGGAAG CGGATTCGTG CGACTATCTT ACGCTGGAAA AGCAGAAGAA
CTTAAAGAAT GCGTAGCGCG CATAAGCAAA TTTGCACTTG CGCAACAAGC TTTACATGCT
GCATAA
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| Protein sequence | MAKVAKHAIS IPRSGIRDVF DRVEQIPDAI SLCLGEPGET ASSHIVEAAC NSLREGKTKY
TDVLGIPEFR EAAANYTNRV KGLNYNADTE IQAVDGATIG LYLAIKSVID PGDEVIIPSP
YFTSYDAEVL MCEGIPVTVA LKPEHGMHIN AAEIRKTISP RTKAIIINSP CNPTGAVTTA
EELEEVAKLC QEFNLWVISD EVYHPFVFAS NPETEPCGNA VAPSIAAAEG MHERTIIVES
LSKTYAMTGW RIGYILAPSR VIEQTSKIAE MMHSSVNSTA QYGGVAALTG PQDHVREMRE
EYRAKRQLVI DGLANCNALR LIEPQGAFYV FVDVRPTGLS SEEFSKKLLD EEKVAVVPGE
AFGAEGSGFV RLSYAGKAEE LKECVARISK FALAQQALHA A
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