| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0045 |
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| Symbol | dnaA |
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| ID | 8709161 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 53866 |
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| End bp | 55485 |
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| Gene Length | 1620 bp |
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| Protein Length | 539 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 646482168 |
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| Product | chromosomal replication initiator protein DnaA |
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| Protein accession | YP_003373316 |
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| Protein GI | 283782562 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0593] ATPase involved in DNA replication initiation |
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| TIGRFAM ID | [TIGR00362] chromosomal replication initiator protein DnaA |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGATA CATTAGGCGA TTCTACATCG CAAGCTGCTT TGGTATGGTC TAATACGCTT
ACTGTTTTAC AGCATAATGC CCTTTTAACT GCGCGCGATA AAGGTTGGTT TGAAGGTGTT
AAACCAGAAG CAATCTTTGG AACGACCATT GTTTTGTGCG TATCTAATGC TGAAACGCAA
CAAGCTTTGC AAAATGAATT AAATTCTCCT CTACTTACAG CATTAAAAAT TTGCACTGGT
AAAGATATGT TTCCTGCTTT TAGGATCGTC CCTCAATCTG AATATCAGGA AAAAGCTGCA
CAAAATTCTT CAAATTCTTT ATCTCATCAA GCACAGAACA ATGCGAATTT AAATAAAAAT
AAAATAGTAA CTGATAATAC AGTTTTGCCT GTTGATAATA TTTCAGTTTC ATCATCTAAT
AATTTGTCAT CGGTTACAGC AAATAATTCA TCTCCTGTAC AACCAGATTT TGATCATGCA
ACTGGAATAT CTACTCTTCA ACAAACTGAT ATTTCTACTG AACAGGCTGC ACAGCAAAAA
ATGCCTGTCT CTGTTCAACG CGATGCAATT ACACATTTAA ATACGTGCGC AACTTTTGAT
ACTTTTGTGC CTGGCGATTC AAATCGTTTT GCAAGAACTG TAGCTTTGGC AGTCGCAGAG
GGTTCCGGCA GAGATTTTAA TCCTTTATGT ATTTATGGTG GCTCCGGTCT TGGCAAAACT
CACTTGCTTA ATGCAATTGG CAATTATGCT TTAGTAAAAG ATTCTTCACT TAAAGTTCGT
TATGTAACAA GTGAGGAATT CACTAATGAA TTTATTGAAG CTCTTCAAAC ACCAAATCAA
AGTCAAGGTC AAATCGCTGA TTTTAATAGG CGATATCGTG AAGTAGATGT TCTTCTTATT
GACGATATTC AGTTCCTTGG TGGAAAAGAA GCAACACTTG AACAATTCTT CCATACTTTT
AATTCTTTAT ATCAAGCAAA TAAGCGAATA GTTATAGCTT CAGATGTTGC GCCAAAAAAT
CTTAAGGGAT TTGAAGCACG CTTAATTTCC AGATTTGAAT CAGGTCTTAC GGTTGATATT
AAACCGCCAG ATTTGGAGAC GCGTATTGCA ATTCTGAGAA TGATGGCATC AATGAATCAC
TGTAATGTTC CAAGTGACGT ACTTGATTTA ATTGCTGAAC GTTTTACAGA AAATATTCGT
GAACTTGAAG GTGCATTGAC ACGCGTTACT GCTGTAGCAT CTTTAAGTAA TCAGCCTGTT
AGTAAAGCTT TAGCTGAACA AGCATTACAA GATTTCTTTG CTACAGATAT TGAAGTAAGG
CCAACTGACA TCATTAGTCA AGTAGCTCAG TATTTCCACA TGACTTTTGA TGAACTTGTT
GGTCGTCAGC GCACAAAGAA TGTTGCACTC GCTCGTCAAA TTGCAATGTA TCTTGCAAGA
GAAATGACAA GCATGAGTTT GGTTGATATT GGCGAAGTTT TTGGCGGTAG GGATCATACT
ACAGTTATGC ATGCTTATAC TCGAGTAAGT GGCGAGATGC AAGAAAAGCA AGAAATTTAT
AACTACGTTA TGGAATTAAC TGTTCGTTTA AAACAAAATC CTGTTGAGCG TAGAAATTAA
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| Protein sequence | MADTLGDSTS QAALVWSNTL TVLQHNALLT ARDKGWFEGV KPEAIFGTTI VLCVSNAETQ
QALQNELNSP LLTALKICTG KDMFPAFRIV PQSEYQEKAA QNSSNSLSHQ AQNNANLNKN
KIVTDNTVLP VDNISVSSSN NLSSVTANNS SPVQPDFDHA TGISTLQQTD ISTEQAAQQK
MPVSVQRDAI THLNTCATFD TFVPGDSNRF ARTVALAVAE GSGRDFNPLC IYGGSGLGKT
HLLNAIGNYA LVKDSSLKVR YVTSEEFTNE FIEALQTPNQ SQGQIADFNR RYREVDVLLI
DDIQFLGGKE ATLEQFFHTF NSLYQANKRI VIASDVAPKN LKGFEARLIS RFESGLTVDI
KPPDLETRIA ILRMMASMNH CNVPSDVLDL IAERFTENIR ELEGALTRVT AVASLSNQPV
SKALAEQALQ DFFATDIEVR PTDIISQVAQ YFHMTFDELV GRQRTKNVAL ARQIAMYLAR
EMTSMSLVDI GEVFGGRDHT TVMHAYTRVS GEMQEKQEIY NYVMELTVRL KQNPVERRN
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