| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0041 |
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| Symbol | gyrB |
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| ID | 8709595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 48188 |
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| End bp | 50263 |
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| Gene Length | 2076 bp |
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| Protein Length | 691 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646482164 |
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| Product | DNA gyrase, B subunit |
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| Protein accession | YP_003373312 |
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| Protein GI | 283782558 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
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| TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCAAACA CGGAAGATAA TTCGATGGAT AATGCCGTCG AAGAGCATAA ACTCGATGAT
GCTCAACTCG ATGATTCACT TGCTCCTGAA CATTATGATG CGAGTGACCT TCGTGTTCTA
GAAGGATTAG AGGCAGTTCG TATTAGACCA GGCATGTATA TTGGTTCTAC CGGTCCTCGT
GGATTGCATC ATTTGGTTTA TGAGATTGTT GATAATTCTG TTGATGAAGC TTTGGCAGGA
TATGCTTCGC ATATTGAAGT AACAATTTTG CCTGATAATG CTATTCGTGT TGTCGATGAT
GGTCGAGGTA TTCCAGTAGA TGAAGTGCCA GGCGAAGGTG TTTCTGGTGT TGAAACAGTT
ATGACTAAGC TTCACGCTGG CGGTAAGTTT GGTGGCGGCG GTTATGCTGT TTCTGGTGGT
TTACATGGTG TAGGTATTTC TGTTGTTAAT GCACTTTCTA CTCGTGTAGA AATTGAAGTT
CGTCGTCAAG GATTCCACTG GACTCAAACT TATGTTGATC AGCATCCAAC TGCTCCTTTG
GCAAAAGGTG AGCCAATGGC AGAAGGAGAA TCTACTGGAA CTTCTGTGAC TTTCTGGCCA
GACGGAACAA TTTTTGAAAC AACAGTTTAT GATTTTGAAA CCTTGCGTTC TCGCTTCCAG
CAGATGGCTT TCTTAAATAA GGGTTTGAAG ATTTCTTTAA CTGATTTACG TAAGCCAGAT
GAAGCTGGAG ATGAAGTTGC AGGTGATTCC GAATCTTCTA GTGAAGAAAA GCATAGAAGC
GTAAGCTACC AGTATGAGCA TGGTATTAAA GACTATGTTG ATTACTTAGT TAAATCTCGA
AAAGCTGTTC CAGTAGAGCC AGATGTTATT GACTTTGAGG CTGAAGATCT TGAAATTGGT
ATTTCTGCGG AAATTGCTAT GCAATGGACT GTTGCTTATT CTGAAGCAGT TCACACTTTT
GCTAATACTA TTTCGACTAC TGAAGGCGGT ACTCACGAAG AAGGATTCCG TGCAGCGCTT
ACTACTTTAG TTAATCGTTA TGCTCGCGAA AAGAATATTT TGAAAGAGAA AGATACTAAT
CTTTCTGGTG ATGACGTTCG CGAAGGCTTA ACAGCAGTTG TTTCAGTAAA GCTTACAACT
CCACAGTTTG AAGGTCAGAC TAAAACAAAG CTTGGCAATT CTGAAGCTAA GACTTTTGTG
CAAAGAGTCA TGACTGAAAA GCTTGGAGAT TGGTTTGATG CTCATCCAAA TGAAGCAAAA
AATATTATTC AAAAAGCTAT AGAAGCTTCT CGTGCTCGAC TTGCTGCTAA AAAAGCTCGC
GAAAATACTC GTCGCAAGTC TATTTTTGAA ACTGCTGGAA TGCCAGATAA GTTGAAGGAT
TGCCAGTCAA GTAATCCTGA AGAATGTGAA TTATTCATAG TCGAGGGTGA TTCTGCAGGT
GGCTCAGCAA TTCAAGGTCG CGATCCTATT ACGCAAGCAA TTTTGCCTTT GCGTGGTAAG
ATTTTGAATA CTGAACGTGC TTCAATCGAC AGAATGATGA AGTCTGAAAC TATTGAATCC
TTAATTACTG CTGTTGGTGG TGGTTATGGA GAAGACTTCG ATTTAAGCAA GGTTCGATAT
CACAAAGTCA TTATTATGGC TGATGCTGAT GTCGACGGTG CTCATATTGC TACTTTGAAT
TTGACATTAT TCTTCCGCTA TATGCGTCCT ATGATTACTG CAGGATACGT TTATGTTGCT
ATGCCACCTT TGTACCGTTT GAAGTGGAGC AAGGGAGCAC ATGATTTTGT TTATACGGAT
GCTGAGCGAG ACAGAGTTTT GGCAGAAGGT AAAGCTGCTG GTCGTCAACT TCCTAAAGGT
GAAGGTATTC AGCGATACAA GGGCTTGGGT GAGATGAGTT ATCAGGAGTT GTGGGAAACA
ACAATGGATC CTGAGCATCG TATTTTGAAG CAAATTCATA TTGAAGATGC TGCTCGAGCT
GATGAAACAT TCTCCATGCT TATGGGCGAT GAAGTAGAGC CTCGTAGACT CTTTATTCAA
AGAAATGCTC ATGATGCAAG GTTTATTGAC GCTTAA
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| Protein sequence | MANTEDNSMD NAVEEHKLDD AQLDDSLAPE HYDASDLRVL EGLEAVRIRP GMYIGSTGPR
GLHHLVYEIV DNSVDEALAG YASHIEVTIL PDNAIRVVDD GRGIPVDEVP GEGVSGVETV
MTKLHAGGKF GGGGYAVSGG LHGVGISVVN ALSTRVEIEV RRQGFHWTQT YVDQHPTAPL
AKGEPMAEGE STGTSVTFWP DGTIFETTVY DFETLRSRFQ QMAFLNKGLK ISLTDLRKPD
EAGDEVAGDS ESSSEEKHRS VSYQYEHGIK DYVDYLVKSR KAVPVEPDVI DFEAEDLEIG
ISAEIAMQWT VAYSEAVHTF ANTISTTEGG THEEGFRAAL TTLVNRYARE KNILKEKDTN
LSGDDVREGL TAVVSVKLTT PQFEGQTKTK LGNSEAKTFV QRVMTEKLGD WFDAHPNEAK
NIIQKAIEAS RARLAAKKAR ENTRRKSIFE TAGMPDKLKD CQSSNPEECE LFIVEGDSAG
GSAIQGRDPI TQAILPLRGK ILNTERASID RMMKSETIES LITAVGGGYG EDFDLSKVRY
HKVIIMADAD VDGAHIATLN LTLFFRYMRP MITAGYVYVA MPPLYRLKWS KGAHDFVYTD
AERDRVLAEG KAAGRQLPKG EGIQRYKGLG EMSYQELWET TMDPEHRILK QIHIEDAARA
DETFSMLMGD EVEPRRLFIQ RNAHDARFID A
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