| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0009 |
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| Symbol | |
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| ID | 8709083 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 10989 |
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| End bp | 13220 |
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| Gene Length | 2232 bp |
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| Protein Length | 743 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646482132 |
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| Product | heavy metal translocating P-type ATPase |
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| Protein accession | YP_003373282 |
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| Protein GI | 283782528 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG2217] Cation transport ATPase |
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| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01525] heavy metal translocating P-type ATPase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.000220588 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGTAAAC TTTTAGCATA TTGCCGTCGT GCATCTCAAT TAACAGTCGT AATTCTTGCT
TTTCCGTTTA TTGCGGCTTT GTACTCATGC AATTTGCCCA TATTAACTAC TTTTTGTGAG
CAAATTTCTA ATCTTTCGCA GCAAATCTTT GATTTCTTAA ATCTTGGTTG CGATATTTCC
ATAAGTCTTA GTATTGGGAA AACTATTATC GCTATTCTCG TTTTATATAC CAGCCTTATT
TCTTTGCGCA ACATGATTAA AAATTTATTG CGCGGAACTT TAGGCATTGA TTTGCTAGCT
TTTGTTGCAT TACTTGCAAC GCTTTGTATT GGTGAGTTTT GGGCAAGCTA TTTGATTGTT
GTAATGGTTT GGACGGGAGA GGCAATTGAA GATTTTGCGC ATATGAAAGC CCAGCGCAAT
CTATCTCTTT TAGTAAGCGC AGCACCAAAA ACTGCTCACC TTATGACTTT GCCAGGCCTT
GAGCATGGAA TGGATAATAA TCAAGCAAAT GATGAATCAT ACGAACCGCC ATGTTTGAGT
GAAAATCAGT GCAAGCCTAG CTCGTGTGTG CTGTGCCAGC ATGCTGAATT TAGAAAAGTA
GATGCCGCTA ATTCTAAGCA ATCTAATATT AGCGAGCAAA ATTGCGACTA TAAACACAAT
ATTTGTTCAT TTTTGCAAGC GTCTACAGAC GGCGAAATCT CCTCAAATTT GCAGCGTTAC
AAAACGGTTC CAGTTGATGA ATTAAATATT GGAAACGTAA TTATTGTGCT TCCTGGCGAA
ACTGTGCCAG TTGATGGTGA GCTGTTAAGC GGTTCTGCAA TTTTAGACAC AAGTGCTATT
AACGGAGAAT CCGTTCCTAG AGAAGTCTAT GCGGGAGCTG CAGTGCTTTC AGGCTGTGTA
AACGGTGGAG TTGTGCTTAT TATGCGCGTA ACAAAGCTGT CTAAAAACTC GCAGTATCAG
AAAATCATGC AGCTTGTTGA GTCTGCTAGG TCTTCTAAAG CTGCAGTAGT TAGATTTGCA
GACATGTTAT CTGTGCCATT TACTGTTTTG TCTTTTGTAA TTGCTGGTTT TGCTTGGGGC
TTTTCTGGAG ATGCTCTTAG ATTTGCGCAA GTGCTAGTTT TGGCAACTCC TTGCCCGCTG
CTTATTGCGG TGCCGGTTGC GTGCATGGCT GGAACTGGGC GTTTAGCGAA ACTTGGAATT
GTTGTTAAAA GTCAGGATGT GCTTGAGCAA TTAAGTCGTG TAACAGATGT ATTTTTTGAC
AAAACTGGCA CGTTGACTGT AAAACAGCCG CAAGTTGTAA ACGTAGACGT AATCGATACT
ACGCAGAAGG CTGATCGTAT TGTAATGCTC GCAGGTGTTC TAGAGACGTA TTCTCAGCAC
ATACTTGCAG GTGGTATTGC TAAAGCGGGA GCAAGCTTGT GGGAAAATGC TCACCCATCG
TCGGTTCCGC AGCTTCCTAG CGTGCGAGAA TACCCTGTAG TGCACAGTGT TAAAGAAACT
GCAGGTCAGG GTATTCAGGG CGTTGTAGAC GGTATTTTAG TACGTGTAGG CAGACGCAAG
TACGTTACAG AGCAAAACGC GAATCAAACT ATAGGCAAAT CTCTTGCAGC AGACGAAATG
GCAACCTACG TGTCTTTTGA CGGCGTGCTG GTAGGAAGAA TCGTATTAAA AGACGTGCCG
CGCGATAACG CGAAATCAAC CATTGACGCA TTGTGTACAC TTGGTGCGCG CTCAATATCT
ATTCTTACTG GCGATAGTTT GCAAGCTGCA ACAACAATTG GTAAAAGTGT TGGAATTGAA
ACAATATATG CAGATTTACT TCCGCAAGAT AAATTAGCGC ATGTAAAAAA ACATAATTAC
AATGCGTATA AAAATAAGCA AAATTCAACT GTAACAATGA TGGTTGGAGA TGGTGTAAAC
GATGCTCCAG TGCTTGCAGC TGCCGATATT GGCGTAGCAG TAACGGATGG CACAGATACG
GCAGCATCTG AATGCGCACA GGTAGTTATT ATGAACAATG ATATTTCTTC TGTTGCAAGC
GCAATAAGAG TAGCAAAACA TACTAAACGC GTTATGGTTC AGTCAGTATT GATGGGCATT
GGATTAGCAA TTATAAGTAT GATTTTTGCG GCTTTCGGTT TTATTCCAGC AGTTATTGGC
GCAATGATGC AAGAAGCAAT TGATGTTGTT GCTATTATGT GGGCTTTAAC AGCATTGCGC
GAACGAAAAT AA
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| Protein sequence | MRKLLAYCRR ASQLTVVILA FPFIAALYSC NLPILTTFCE QISNLSQQIF DFLNLGCDIS
ISLSIGKTII AILVLYTSLI SLRNMIKNLL RGTLGIDLLA FVALLATLCI GEFWASYLIV
VMVWTGEAIE DFAHMKAQRN LSLLVSAAPK TAHLMTLPGL EHGMDNNQAN DESYEPPCLS
ENQCKPSSCV LCQHAEFRKV DAANSKQSNI SEQNCDYKHN ICSFLQASTD GEISSNLQRY
KTVPVDELNI GNVIIVLPGE TVPVDGELLS GSAILDTSAI NGESVPREVY AGAAVLSGCV
NGGVVLIMRV TKLSKNSQYQ KIMQLVESAR SSKAAVVRFA DMLSVPFTVL SFVIAGFAWG
FSGDALRFAQ VLVLATPCPL LIAVPVACMA GTGRLAKLGI VVKSQDVLEQ LSRVTDVFFD
KTGTLTVKQP QVVNVDVIDT TQKADRIVML AGVLETYSQH ILAGGIAKAG ASLWENAHPS
SVPQLPSVRE YPVVHSVKET AGQGIQGVVD GILVRVGRRK YVTEQNANQT IGKSLAADEM
ATYVSFDGVL VGRIVLKDVP RDNAKSTIDA LCTLGARSIS ILTGDSLQAA TTIGKSVGIE
TIYADLLPQD KLAHVKKHNY NAYKNKQNST VTMMVGDGVN DAPVLAAADI GVAVTDGTDT
AASECAQVVI MNNDISSVAS AIRVAKHTKR VMVQSVLMGI GLAIISMIFA AFGFIPAVIG
AMMQEAIDVV AIMWALTALR ERK
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