Gene DhcVS_536 details

Gene Information

• Locus tag: DhcVS_536
• Symbol: dnlJ
• ID: 8657475
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dehalococcoides sp. VS
• Kingdom: Bacteria
• Replicon accession: NC_013552
• Strand: -
• Start bp: 499912
• End bp: 501954
• Gene Length: 2043 bp
• Protein Length: 680 aa
• Translation table: 11
• GC content: 52%
• Product: DNA ligase, NAD-dependent
• Protein accession: YP_003330016
• Protein GI: 270307958

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAGATA TGTTTTCCCC CCAGACTGAA ATAGAAAACC TGAGGCGTGA AATAAACCGC 
CATAACCAGT TGTATTACGT TCAGGATAAC CCTGAAATCT CTGATTCCGA ATATGATGCC 
TTGCTCCGCC GCTTAAAAGA GCTGGAGGAA GCCCACCCTG AGCTTGTTAC CCCGAACTCA 
CCCACCCAAA GAGTGGGTGC TGAGCCGCTA AAGGCCTTCG GCATTGTCAA TCACCCTTAT 
CCGCTGCTTT CTCTGGCAAA TGCCTTTTCA GATACGGAAC TGGAAGCCTG GTACCTGCGG 
GTAAAAAAGC TGCTGGGGAA TGCCGCTTTT CAGATAGACT GCGAACCCAA AATGGACGGG 
CTGGCAGTTG CACTGACCTA CCGAAACGGC AAGTTTACCA CCGGCGCTAC CCGGGGTGAC 
GGCTTTCAGG GTGAAAATAT TACCCGAAAC CTGAGAACTA TCCATTCTAT ACCCTTAAAT 
ACCGAGGAGG ATGCCCCCCC TGTTTTTGAA ATAAGGGGTG AAGTTTATCT TCCAAAAGAA 
GGCTTCGCCA AACTCAACTG CGAAAGGGCT GATAAAGGGC TATCCCTTTT TGCCAACCCC 
CGCAATGCCG CCGCCGGTTC ACTCCGCCAG CTTGACCCGT TAGTAACGGC CGAAAGACCG 
CTGGATATAT TTATTTATGC TCTGGGGTAT GCGGAAGACA GCCTGCTGCC TGACAGCCAC 
TGGCAGATAC TGGAGTACTT CAGCCGCCTG GGTTTCAGGA TAAACCCGCG TAACCGTCTG 
GTAAACACCC TGGCAGAAGC CAAAGAATAC TACCGTGAGA TGACGGAAAA CCGGGATTCC 
CTGCCCTACG AAGCAGACGG GGTAGTATTC AAGGTGGATT CCGTATCCCT GCAGAAAAAA 
CTGGGGGATG CGGGACGTGA ACCCCGCTGG GCTATCGCCT ATAAATTTCC GGCTGAACAG 
GTCACTACCC TCCTTAGGAA AATAGGCATA TCGGTAGGCC GTACCGGCAC TTTAAACCCG 
TATGCTATCC TTGAACCGGT AAATGTAGGC GGGGTAGTGG TAAAACAGGC CAGTTTGCAT 
AACGAAGATG ATATACTCCG CAAGGATATC CGTGAAGGGG ATACAGTAGT AATCCAGCGG 
GCAGGCGAAG TAATACCTGA GGTAGTTGCC CCGGTACTGG CTAAACGCAG CCCCGAATCA 
AAACCCTTCA GCATGGAAGA GACCCTGTTT AACCCCAAAC TTAGCCGCCC GGCCTGCCCG 
GTGTGTGGAG GGGAAATATA CCGCCCTGCA GGCGAGGCTA TGCACTACTG TGCCAACGTT 
TCCTGTCCCG CCCAGTTTGA ACGCCAGCTG GAACACTTTG TTTCCAGAGG GGCTATGGAT 
ATCCGCGGCA TCGGCGAAAG CCTGAGCGTG ATACTGGCAC AAGAGGGATT GGTCAAAAAC 
GTATCAGACC TTTATTACCT GACTGCGGCT GATTTACTGA AACTGCCGCG CATGGGCGAA 
AAAAGTGCGG ATAATATAAT AAAAGCCATC TCAGACAGCA AAAGCCGCCC GCTGGACAGG 
GTAATATTCG GGCTGGGTAT CCGCCACGTG GGGAATGAGA CAGCCGCTTT GCTATCCAGC 
CGCTACGGGG ATATATGGGC ACTGGCTGGG GCAGGTCTTG ATAAACTGCA AACCATACCG 
GATATAGGTG CCAAGATAGC CAGCAGCATA AAAGCCTATT TCAGCGAAGA AAAAAACATA 
GCGGTCATCC GCCGTTTGGA AACAGCCGGA GTAAAGCTTG CTTCAGACCA AAAGCCCTCA 
CATAAATCTC TGCCGCTTTC CGGAGTGGAA TTTGTAGTTA CCGGCAAACT GGAAAGTTTA 
AGCCGCGAAG AAACACAACA AAAAATCCGC TCACTTGGCG GCACGGCCAA GGACAATGTT 
ACCAAAGCAA CCCGCTATCT GGTGGTAGGT GCTGATGCCG GCTCCAAGCT GGCTAAAGCC 
CGGAGTATGG GGGTAAAAGA GCTGTCCGAA CAGGAACTTA TAAATATGCT GGAGCAATCT 
TGA 

 

Protein sequence

MEDMFSPQTE IENLRREINR HNQLYYVQDN PEISDSEYDA LLRRLKELEE AHPELVTPNS 
PTQRVGAEPL KAFGIVNHPY PLLSLANAFS DTELEAWYLR VKKLLGNAAF QIDCEPKMDG 
LAVALTYRNG KFTTGATRGD GFQGENITRN LRTIHSIPLN TEEDAPPVFE IRGEVYLPKE 
GFAKLNCERA DKGLSLFANP RNAAAGSLRQ LDPLVTAERP LDIFIYALGY AEDSLLPDSH 
WQILEYFSRL GFRINPRNRL VNTLAEAKEY YREMTENRDS LPYEADGVVF KVDSVSLQKK 
LGDAGREPRW AIAYKFPAEQ VTTLLRKIGI SVGRTGTLNP YAILEPVNVG GVVVKQASLH 
NEDDILRKDI REGDTVVIQR AGEVIPEVVA PVLAKRSPES KPFSMEETLF NPKLSRPACP 
VCGGEIYRPA GEAMHYCANV SCPAQFERQL EHFVSRGAMD IRGIGESLSV ILAQEGLVKN 
VSDLYYLTAA DLLKLPRMGE KSADNIIKAI SDSKSRPLDR VIFGLGIRHV GNETAALLSS 
RYGDIWALAG AGLDKLQTIP DIGAKIASSI KAYFSEEKNI AVIRRLETAG VKLASDQKPS 
HKSLPLSGVE FVVTGKLESL SREETQQKIR SLGGTAKDNV TKATRYLVVG ADAGSKLAKA 
RSMGVKELSE QELINMLEQS