| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xcel_2685 |
|---|
| Symbol | |
|---|
| ID | 8650229 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylanimonas cellulosilytica DSM 15894 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013530 |
|---|
| Strand | - |
|---|
| Start bp | 2969831 |
|---|
| End bp | 2973487 |
|---|
| Gene Length | 3657 bp |
|---|
| Protein Length | 1218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_003327257 |
|---|
| Protein GI | 269957468 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAACCTCA CTGGCCTCGT ACCCGCCCTC CTCGCCGACC CGGGCGCCGC CGCCGCCCTC
GAGGATGTGC GCACCCGCGG GTTCGTCGAC GTCGTCGGGC CGCAGGGGGT GCGCGCACCG
CTGCTGGTCG AGGCGGCGAA GCAGCGCCCG GTCGTGGTCG TCACGGCGAC GGGGCGGCAG
GCCGACGAGC TGGCCGCGTC CGTGCGGGCG TACCTGCCGG ACGAGCAGGC CGACGAGGTC
GCGGTGCTCC CGGCGTGGGA GACCCTCCCG CACGAGCGGC TCTCGCCGCG TGCGGACACG
GTCGCGCGGC GCATCGCGGT GTTCCGGCGG CTGGCGCACC CCGTGCCGGA GACTGGTCCG
GCGGGGCCGA TCCGGGTCCT GGTGATGCCG GCGCGCGCCC TGCTGCAGCC GGTGGTCTCG
GGGCTGGGCG AGCTGGAGCC GGTCGCTCTG CACGACGGCG ACGTCGCGGA CCTCACCGAC
GTCGCGGAGC GCCTCGTCGC GGCCGCCTAC TCGCGCGTGG ACATGGTGGA GCGGCGCGGC
GAGTTCGCGG TGCGCGGCGG CATCCTGGAC GTGTTCCCGC CCACGGAGGA CCACCCGCTG
CGTGTGGAGT TCTGGGGCGA CGAGGTCAGC GAGATCCGCT GGTTCTCCGT GGCCGACCAG
CGCTCGTTGG AGATCGCGCA ACAGGGCCTG TGGGCTCCGC CGTGCCGCGA GATCCTGCTC
ACCGCGAGCG TCCGGGCCCG CGCCGCGGCG CTCGTGGAGA CGATGCCGGG CGCCGTCGAG
ATGCTCGACC GGCTCGCGGC GGGCGTCGCC GTCGAGGGCA TGGAGTCGCT CGCCCCCGTG
CTCGTGGACG AGTTGGTGCC GGTGCTCGAC CTGGTGCCCG ACGACGCGCT CCTGGTCATC
GACGAACCGG AGCGGGTGCG CCGTCGGGCC CACGACCTGG TGGCGACGAC GGAGGAGTTC
CTCGCCGCGG CGTGGACGGG CGCGGTGGCC GGCGGTGCCG CACCCATCGA CCTGTCCTCG
GCGTCGTTCG CGAGCTTCGC CGACACGCGG GCGGTCGCGG CCCGCCGCGG CCTGGGCTGG
TGGACGCTGT CGGCGTTCGG CCTGGACCCC GACGCCGCGG ACGCGGTGGT TGAGCCTGTC
GAAACCACCC CACAGCGTGC CGGTCAGGTG GTTTCGACAG GCTCAACCAC CGAGGGCGTC
ACCACCGACG GCGTGACCAC GCACACCATC AAGGCCCGCG AGGTCGAGTC GTACCGCGGC
GACCTGGAGC GCGCGCTGGA AGAGGTGCGC CGCCTGCAGC GTGACCAGTG GCGGCTCGTG
CTCACCACCG AGGGCCACGG CCCGGCCAAG CGCATGGTCG AGCAGCTCAT GGCCGCCGAC
TGCCCCGCCC GCCTGGTCTC GGTGCTCGAC GAGCAGCCCG ATCCCGGCGT CGTCCTGGTG
CTGCCCGCCC TGGTGGGCAA GGGCTTCGTG GCCCCAGATC TCCAGCTCGC CGTGTTCTCC
GAGTCCGACC TCACCGGCCG CCAGGGCACC GGCACACGCG ACATGCGCAA GCTGCCGTCC
CGACGCCGCA ATGTCGTCGA CCCCCTCCAG CTGCGGGCCG GGGACTACGT GGTGCACGAG
CAGCACGGCG TCGGCAGGTT CGTCGAGATG GTGCAGCGGA CCCTCGGGGC CGGCTCCAAC
GCGGCCACCC GCGAGTACCT GGTGCTGGAG TACGCGAGCA GCAAGCGCGG GCAGCCCGGC
GACCGGCTCT TCGTGCCCAT GGACCAGCTC GACCAGGTCA CCAAGTACGT CGGCGGCGAG
GCCCCGTCGC TCAGCAAGAT GGGCGGCGCC GACTGGAAGA ACACCAAGGC CAAGGCCCGC
AAGCACGTCA AGGAGATCGC GGGCGAGCTC ATCCGGCTGT ACTCCGCGCG CATGGCCACC
CAGGGTCACG CGTTCGGCGC CGACACCCCG TGGCAGCGCG AGCTCGAGGA CGCCTTCGCG
TACATCGAGA CGCCCGACCA GCTCTCCACC ATCGACGAGG TCAAGGCCGA CATGGAGAAG
CCGACGCCGA TGGACCGCCT GGTGTGCGGC GACGTCGGCT ACGGCAAGAC CGAGATCGCG
ATCCGGGCCG CGTTCAAGGC GATCCAGGAC GGCAAGCAGG TCGCCGTGCT CGTCCCGACG
ACGCTGCTCG TCCAGCAGCA CTTCGAGACC TTCTCCGAGC GCTACCAGGG CTTCCCCGTG
AAGGTCGCGG CGCTGAGCCG CTTCCAGAAC CCGCGCGAGT CCGAGGAGAC CATCAAGGGC
CTCAAGGACG GCACCGTCGA CGTCGTCATC GGCACCCACC GGCTCATCAC CGGGGCCGTG
CAGTTCAAGG ACCTCGGCCT GGTGATCATC GACGAGGAGC AGCGCTTCGG CGTCGAGCAC
AAGGAGACCC TCAAGCAGCT CCGCACCAAC GTGGACGTGC TCGCCATGTC GGCGACGCCC
ATCCCGCGCA CGCTCGAGAT GGCCGTCACC GGCATCCGCG AGATGTCCAC GCTCGCGACC
CCGCCCGAGG AACGCCACCC CGTGCTCACC TACGTGGGCG CCTACGAGGA GCGGCAGATC
TCCGCCGCCG TCCGCCGCGA GCTCCTGCGC GAGGGCCAGG TGTTCTACGT CCACAACCGC
GTCGAGTCGA TCCAGCGGAC GGCGTCGCGC CTGGCCGAGC TGGTGCCCGA GGCCCGCATC
GGCGTCGCGC ACGGCAAGAT GGGCGAGCAC CAGCTCGACC AGGTCATCCG CGGGTTCTGG
GAGAAGGAGC TCGACGTCCT GGTGTGCACC ACCATCGTCG AGACCGGCCT GGACATCTCC
AACGCCAACA CGCTCATCCT GGAACGCGCG GACATGCTGG GCCTGAGCCA GCTGCACCAG
CTGCGCGGCC GCGTCGGCCG TGGCCGCGAG CGCGCCTACG CCTACTTCCT GTACCCGCCC
GAGAAGCCGC TCACCGAGCA GGCCCACGAC CGGCTCGCCA CCATGGCCGC CCACACCGAC
CTCGGCGCGG GCATGCAGAT CGCCATGAAG GACCTCGAGA TCCGCGGCGC CGGCAACCTG
CTCGGCGGCG AGCAGTCCGG CCACATCCAG GGCGTCGGGT TCGACCTGTA CGTGCGCATG
GTGGGGGAAG CCGTGCAGAA CTTCCGCGGC GACGCCCCGG AGGAGCAGCC CGAGGTCACC
ATCGAGCTGC CCGTCGACGC CCACCTGCCC GAGTCCTACA TCGCCACCGA GCGGCTCCGG
CTCGAGGCGT ACAAGAAGAT CGCCGCGGCC ACGGACGCGG CGGCGCTCGC GGAGGTCCGT
GCCGAGCTGG TCGACCGGTA TGGCCCGCTG CCCGACGTCG CCTCCGCGCT GTTCGACGTG
GCCGACTTCC GCAACCATGC CCGCGCGGCA GGGCTCTCGG ACGTCACCGC GCAGGGCAAG
TACGTGCGGT TCGCCCCGGT GGACCTGGCC GAGTCGGCGC AGCTGCGCCT CAAGCGGCTC
TACCCCGGCG TCATCCTCAA GCCCGCGATC CGCGCGTTCC TGGTCCCCTT CCCGACGACG
GCGCGCATCG GCGGCCGACC CCTGCGCGGA GCCGAGGTCC TCACCTGGGC CCGCCAGCTC
GTCGACGCCG TCATCCGCGG CGAGGTCTCG GCCGCGGCCG CGGTCGGCAC CCGCTGA
|
|---|
| Protein sequence | MNLTGLVPAL LADPGAAAAL EDVRTRGFVD VVGPQGVRAP LLVEAAKQRP VVVVTATGRQ
ADELAASVRA YLPDEQADEV AVLPAWETLP HERLSPRADT VARRIAVFRR LAHPVPETGP
AGPIRVLVMP ARALLQPVVS GLGELEPVAL HDGDVADLTD VAERLVAAAY SRVDMVERRG
EFAVRGGILD VFPPTEDHPL RVEFWGDEVS EIRWFSVADQ RSLEIAQQGL WAPPCREILL
TASVRARAAA LVETMPGAVE MLDRLAAGVA VEGMESLAPV LVDELVPVLD LVPDDALLVI
DEPERVRRRA HDLVATTEEF LAAAWTGAVA GGAAPIDLSS ASFASFADTR AVAARRGLGW
WTLSAFGLDP DAADAVVEPV ETTPQRAGQV VSTGSTTEGV TTDGVTTHTI KAREVESYRG
DLERALEEVR RLQRDQWRLV LTTEGHGPAK RMVEQLMAAD CPARLVSVLD EQPDPGVVLV
LPALVGKGFV APDLQLAVFS ESDLTGRQGT GTRDMRKLPS RRRNVVDPLQ LRAGDYVVHE
QHGVGRFVEM VQRTLGAGSN AATREYLVLE YASSKRGQPG DRLFVPMDQL DQVTKYVGGE
APSLSKMGGA DWKNTKAKAR KHVKEIAGEL IRLYSARMAT QGHAFGADTP WQRELEDAFA
YIETPDQLST IDEVKADMEK PTPMDRLVCG DVGYGKTEIA IRAAFKAIQD GKQVAVLVPT
TLLVQQHFET FSERYQGFPV KVAALSRFQN PRESEETIKG LKDGTVDVVI GTHRLITGAV
QFKDLGLVII DEEQRFGVEH KETLKQLRTN VDVLAMSATP IPRTLEMAVT GIREMSTLAT
PPEERHPVLT YVGAYEERQI SAAVRRELLR EGQVFYVHNR VESIQRTASR LAELVPEARI
GVAHGKMGEH QLDQVIRGFW EKELDVLVCT TIVETGLDIS NANTLILERA DMLGLSQLHQ
LRGRVGRGRE RAYAYFLYPP EKPLTEQAHD RLATMAAHTD LGAGMQIAMK DLEIRGAGNL
LGGEQSGHIQ GVGFDLYVRM VGEAVQNFRG DAPEEQPEVT IELPVDAHLP ESYIATERLR
LEAYKKIAAA TDAAALAEVR AELVDRYGPL PDVASALFDV ADFRNHARAA GLSDVTAQGK
YVRFAPVDLA ESAQLRLKRL YPGVILKPAI RAFLVPFPTT ARIGGRPLRG AEVLTWARQL
VDAVIRGEVS AAAAVGTR
|
|---|
| |