| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xcel_0405 |
|---|
| Symbol | |
|---|
| ID | 8647908 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylanimonas cellulosilytica DSM 15894 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013530 |
|---|
| Strand | + |
|---|
| Start bp | 476115 |
|---|
| End bp | 477659 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | |
|---|
| Product | ABC transporter related protein |
|---|
| Protein accession | YP_003325002 |
|---|
| Protein GI | 269955213 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.251912 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAGCA CGATCCTCGA GATGCAGGAC ATCACCAAGA ACTTCCCCGG CGTCAAGGTT
CTCAAGGACG TGAGCCTCAA GGTCGCCGAG GGCGAGATCC ACGCCATCTG CGGCGAGAAC
GGCGCCGGCA AGTCGACCCT CATGAAGGTC CTGTCCGGCG TGTACCCGCA CGGCACCTAC
GACGGCCGCA TCCTGCTCCG CGGCCAGGAG GTCGCCTTCG GTGGCATCAA GGACTCCGAG
GCCCAGGGCA TCGTCATCAT CCACCAGGAG CTGGCGCTCG TCCCGCACCT GTCGGTGGCC
GAGAACATCT TCCTCGGCAA CGAGGTGGTC CAGCGTGGCC TGATCGACTG GCACCGGGCC
AACGCCGAGG CCTCCGCACT CATGGAGCGG GTGGGTCTCA GCGAGCTCCC GGTCACGCCG
GTGGGGCAGC TCGGCGTCGG CAAGCAGCAG CTCGTCGAGA TCGCGAAGGC GATCAGCAAG
GATGTCTCGC TCCTCATCCT CGACGAGCCG ACGGCAGCCC TGAACGACAG CGACTCCGAG
CACCTGCTCG GCCTGCTGCG CGAGCTCAAG GCACAGGGCA TCACCTGCAT CATCATCAGC
CACAAGCTCG GTGAGATCGA GGACATCGCG GACTCGACGA CGATCATCCG CGACGGTGCC
GTCGTCGAGA CCATCGACAT GCACGGGCCC GATGCCACGC AGGACCGCAT CATCCGCGGC
ATGGTCGGCC GCGACCTCGA CCAGCGCTAC CCGGAGCGGT CGGTCACCGT CGGTGACGTG
GTCTTCCGCG TCGAGGACTG GCACGTCCAC CACCCGACAC AGCCGCGCGT CCTGGTCGAG
AAGGCCTCGT TCGACGTCCG TGCCGGTGAG GTCGTCGGCA TCGCCGGCCT CATGGGCGCC
GGGCGCACCG AGCTGGCCAT GTCCCTGTTC GGGCGCAGCT ACGGCCGCGA CGTCTCGGGC
AAGGTCTACC TGCACGGCAA GGAGATCGAC ACCCGGACCG TCGGGTCGGC CATCGCGAAC
GGCCTCGCGT ACGTCTCCGA GGACCGCAAG CACTACGGGC TCAACCTCAT CCAGGACATC
CGCACCAACG TCACCGCTGC CGGCCTCGGC AAGATCTCGT CACGCGGGTT CGTCAACGGG
AACGAGGAGA TCGCCGTCGC CGAACAGGCA CGCAAGGCCA TGCGCATCAG GACGCCGTCC
GTCATGCAGA CCGTCGGCAA CCTGTCCGGC GGCAACCAGC AGAAGGTCGT GCTGTCCAAG
TGGCTGTACA CCGACCCTGA GGTGCTGATC CTCGACGAGC CCACCCGCGG CATCGACGTC
GGCGCCAAGT TCGAGATCTA CACGATCATC AACGAGCTCG CCGCGCAGGG GAAGGCGGTC
GTCGTCATCT CCTCCGAGCT GCCCGAGCTG CTCGGCACCT GCGACCGCAT CTACGCGCTC
GCCTACGGGC GGATCACGGG CCAGCTCCCC GTCGCCGAGG CCACCCAGGA ACGCCTCATG
GAGCTCATGA CCATCGAGAA GACCAGCAAG GAGGCTGTCC GATGA
|
|---|
| Protein sequence | MSSTILEMQD ITKNFPGVKV LKDVSLKVAE GEIHAICGEN GAGKSTLMKV LSGVYPHGTY
DGRILLRGQE VAFGGIKDSE AQGIVIIHQE LALVPHLSVA ENIFLGNEVV QRGLIDWHRA
NAEASALMER VGLSELPVTP VGQLGVGKQQ LVEIAKAISK DVSLLILDEP TAALNDSDSE
HLLGLLRELK AQGITCIIIS HKLGEIEDIA DSTTIIRDGA VVETIDMHGP DATQDRIIRG
MVGRDLDQRY PERSVTVGDV VFRVEDWHVH HPTQPRVLVE KASFDVRAGE VVGIAGLMGA
GRTELAMSLF GRSYGRDVSG KVYLHGKEID TRTVGSAIAN GLAYVSEDRK HYGLNLIQDI
RTNVTAAGLG KISSRGFVNG NEEIAVAEQA RKAMRIRTPS VMQTVGNLSG GNQQKVVLSK
WLYTDPEVLI LDEPTRGIDV GAKFEIYTII NELAAQGKAV VVISSELPEL LGTCDRIYAL
AYGRITGQLP VAEATQERLM ELMTIEKTSK EAVR
|
|---|
| |