| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xcel_0179 |
|---|
| Symbol | |
|---|
| ID | 8647678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylanimonas cellulosilytica DSM 15894 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013530 |
|---|
| Strand | + |
|---|
| Start bp | 214095 |
|---|
| End bp | 215804 |
|---|
| Gene Length | 1710 bp |
|---|
| Protein Length | 569 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_003324776 |
|---|
| Protein GI | 269954987 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGCG CCAGAGCCGC CGTCTCTGCA CCCACGGCGT GGGGGTGGGG CGTGGCCGTC
GCGGTTCCCC TGCTCTTCCT CGGCGTGTTC TTCGCCTGGC CCGTGGTGGC GTTGGTCGGT
CGGGGTTTCA CCGGCGACGC CGGCGGCGTG GATCTCGGCG AGGTGCGCGA CGTGCTCGGC
AACCCACGGA CATGGCGGCT CGTCGGCACC ACGCTCGCCC AGGCCGGGGC GGGAGCCGTC
GGGTCCGTGG CGCTCGGGCT GCCCGTCGCG TACCTGCTGT ACCGGACGCG GTTCCCGGGA
CGCGGGGTGC TGCGCGGCCT GGTGACCGTG CCGTTCGTGC TGCCCACCGT CGTCGTCGGC
GTGGCTTTCC GGTCGCTGTT CCGGGCCGAC GGACTGCTCG GCTGGGCCCG GCTCGAGGAG
ACGTTCGCCG CCGTCGTCGT CGCGCTGGTG TTCTTCAACG TCTCCGTCGT CGTGCGGACC
GTCGGTGGGC TGTGGGAACG TCTCGACCCG CGCGTCGAGC AGGCGGCGCG GGCCCTCGGA
GCATCGCCGG CGCGCGCCTT CCGCACGGTG ACGCTCCCGG CGCTCGCCCC CGCGATCGCC
AGCGCCGCCG CCGTCGTCTT CCTGTTCTGC GCGACGGCGT TCGGTGTCGT GCTGGTGCTC
GGCGGGCTCG GGTACGGCAC GGTCGAGACG GAGATCTACC GGCGCACCAC CCAGTTCCTC
GACCTGCGCA CGGCGGCCGT GCTGTCGATC CTCCAGCTCC TGGTCGTCAC CCTCGCGCTG
TGGGTCGCCG GCCGCGCCCG CGCCCGCCGC GAGCGTGCGC TGCACCTCGT GCCCGACGAC
GTCGCCGCGC ACCGCTGGAG CCACCGGAAC CTGCCCGACG TCGCGGCGGC CGCGGCGACC
GTCCTCGTCG TCGGCGGGCT CATCGTGCTG CCGCTGGCCG GGCTGGTGGG GCGGTCGTTC
CGCGGGCCGG ACGGCTCCTG GGGGCTGGCG AACTACCGCG CGCTCGGCAC CACCGGCGGG
CACAACGCGC TGGTCGTCAC CGTGTGGGAG GCGCTCGCCA CCTCGTTGCG GACGGCGCTG
CTCGCGACCG TGATCGCCGT CGTCGTCGGC GGGCTGGTCG CGCTCGTGGT CTCCCGGCGG
CCGCGCGCCC GCGCGACGCG GCGGGCGGTC GGGCTGCTCG ACGCCGTCGT GATGCTCCCG
CTCGGTGTGA GCGCCGTGAC CGTCGGGTTC GGGTTCCTCA TCACGCTCGA CCGGCCGCTC
GGCCTGAACG TCGACCTGCG CACCTCCGGG CTGCTGGTGC CGATCGCGCA GGCCGTCGTC
GCGGTGCCGC TCGTGGTGCG CACGGTGCTG CCCGTGCTGC GGGCCATCGA CCCGCGGCTG
CGGCAGGCGG CCGGGGTGCT CGGCGCGTCG CCCGGGCGGG TGCTGCGCGA CGTCGACCTG
CCGATCGCGC TGCGGTCGCT GGGGCTCGCG GTCGGGTTCG CGTTCGCGGT GTCGCTCGGG
GAGTTCGGTG CCACGGCGTT CCTCGCCCGG CCCGACTCGG CGACCCTGCC CGTGGTGATC
TTCCGGCTCA TCGGCCGCCC CGGGGCGGAG AACTACGGCA TGGCCCTGGC CGCGTCGGTG
GTCCTGGCGG TGCTCACCGC CGTCGTCATG ATGCTGGCCG AGAGCCTGCG CGGGAACCGC
GCCTCCGGCG CGGCGGGAGG AGAGTTCTGA
|
|---|
| Protein sequence | MTRARAAVSA PTAWGWGVAV AVPLLFLGVF FAWPVVALVG RGFTGDAGGV DLGEVRDVLG
NPRTWRLVGT TLAQAGAGAV GSVALGLPVA YLLYRTRFPG RGVLRGLVTV PFVLPTVVVG
VAFRSLFRAD GLLGWARLEE TFAAVVVALV FFNVSVVVRT VGGLWERLDP RVEQAARALG
ASPARAFRTV TLPALAPAIA SAAAVVFLFC ATAFGVVLVL GGLGYGTVET EIYRRTTQFL
DLRTAAVLSI LQLLVVTLAL WVAGRARARR ERALHLVPDD VAAHRWSHRN LPDVAAAAAT
VLVVGGLIVL PLAGLVGRSF RGPDGSWGLA NYRALGTTGG HNALVVTVWE ALATSLRTAL
LATVIAVVVG GLVALVVSRR PRARATRRAV GLLDAVVMLP LGVSAVTVGF GFLITLDRPL
GLNVDLRTSG LLVPIAQAVV AVPLVVRTVL PVLRAIDPRL RQAAGVLGAS PGRVLRDVDL
PIALRSLGLA VGFAFAVSLG EFGATAFLAR PDSATLPVVI FRLIGRPGAE NYGMALAASV
VLAVLTAVVM MLAESLRGNR ASGAAGGEF
|
|---|
| |