| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_20540 |
|---|
| Symbol | |
|---|
| ID | 8633689 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | + |
|---|
| Start bp | 2287841 |
|---|
| End bp | 2288608 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | |
|---|
| Product | uncharacterized protein, gamma-carboxymuconolactone decarboxylase subunit like protein |
|---|
| Protein accession | YP_003314810 |
|---|
| Protein GI | 269795355 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.125919 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.227707 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCCGTC GGCCGGGTGC GGCGGCCAGG GCGGAGCGCG CCACACTGTT CAGGGACGAG
GCGTCCCCGT TCGCGGAGAC CGACCCCGAG CTCGTCGCGT TCTACGACGA CCTCGCCCTC
GACGAGACCC TCCGCAAGGT CACGACCGAC CTGTCCCGCG CGGACCGGCT GACCTACCAG
CTCGGGGCCC TCGTGGCGGT CGGGGCCGTC ACCGAGTTCC GCGGGCTCCT CCGTGCCGCG
CTGGACAACG CCGTGACGCC CGTCCAGGCC AGGGAGGTCG TCTACCAGGC GGTCGCGTAC
GTCGGGATGG CCCGCGCCGC GGACTTCGTC CGTGCGACCG ACGACGTGCT GACCGAGCGC
GGCGTGGCCC TGCCGCTCGA GGGGATGTCG ACCACGACGC CCGAGACCCG CGCGACCGAC
GGACTCGCGG TGCAGCAGCG GATCGTCGGC AAGAGCACGG TCGAGAGCAT GTACACGAAC
GCGCCGGCCG ACGCGCTGCG GTTCCAGGAG CTGCTCTCCG CGAGCTGCTT CGGCGACTAC
TACACGCGGG GCGGGCTCGA CGTGCAGCAA CGTGAGCTGC TGACCTTCTC GATCCTCACC
GCCCTCGGCG GCGCCGACGC GCAGGTCGCC GGGCACGTCC AGGCCAACCT CAACGTCGGG
AACAGCCGGG CCACGTTGCT CGACGTGCTC ACCGTCCTGC TGCCGCTCGT CGGGTACCCC
CGCACGCTCA ACGCCCTGGC CGCGGTGAAC CAGGTCGCCC CGGCCTGA
|
|---|
| Protein sequence | MTRRPGAAAR AERATLFRDE ASPFAETDPE LVAFYDDLAL DETLRKVTTD LSRADRLTYQ
LGALVAVGAV TEFRGLLRAA LDNAVTPVQA REVVYQAVAY VGMARAADFV RATDDVLTER
GVALPLEGMS TTTPETRATD GLAVQQRIVG KSTVESMYTN APADALRFQE LLSASCFGDY
YTRGGLDVQQ RELLTFSILT ALGGADAQVA GHVQANLNVG NSRATLLDVL TVLLPLVGYP
RTLNALAAVN QVAPA
|
|---|
| |