| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_10860 |
|---|
| Symbol | |
|---|
| ID | 8632722 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | + |
|---|
| Start bp | 1264882 |
|---|
| End bp | 1266459 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | |
|---|
| Product | predicted membrane protein |
|---|
| Protein accession | YP_003313866 |
|---|
| Protein GI | 269794411 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.197063 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGACCAGG GGCACAGCGA ACGCGAGCAG ACCGCAGCGC CGACGGCCGG CGGTCGTCCC
GGCGCGCCCG AGAGCGACGG GCGGGACGAC CAGCAGGCCG CGCCACACGG CGAGCCCGGC
GGCGACGTGC GGTCTGCGTC GCCCGAGAGC AGCCGCGTCG CGTCGGCGCT GAGGGCCGCC
GTCCGCGGCC CCGTCGTGCA CTGGCCGGTC ACGGTGCTGA CCCTCGTCGC CTTCCTCGCC
TACCTCACGC TGTCGCTGGC CCGGTGGTAC CGCTGGGAGA ACCCGTCGTG GGACAACGCG
ATCTTCGAGC AGGCCATCGC TGGCTACGCG CGGCTGGGCG CCCCGATCGT GCCGATCAAG
GGCCCTGACT TCAACCAGCT GGGGGACCAC TTCTCGCCGC TGCTCGTGGT GATCGCGCCG
TTCTACCGGG TGTTCCCGTC GCCGGTGACC CTGCTGGTGG CGCAGTGCGT GCTCGTCGCG
GTGTCCGTCG TGCCGATCGC GCTCGTCGCG CGCCGACTGC TCGGTGCCTG GCCCGGCCTC
GCGGTCGGCT TCGCCTACGC CTTCGCGTGG GGGATCCAGT CGGCGGTCGA CGTGCAGTTC
CACGAGTACG CGCTCGCGGT CCCGCTGCTG GCCTTCGGGA TGGCGGCCTT CCTCACCGAG
CGGTGGCGGG CGAGCGCCGT CTGGGTGGTC CTGCTGCTGG GGGTCAAGGA GGACCTCGGC
CTGACGGTCG CGGCCTTCGG CGTCGTGCTG TGGCTGCGCG GGCAGCGGCG GCTGGGCACG
GCCGTCGCTG CGGTAGGCGC GGCCGGCTTC GTGCTGGTGC TCACGGTGAT CGTCCCCTTC
TTCAACCCGC AGGGCCGCTA CGACTACTGG GGCAAGCTCA GCGAGGACGG GTCGGCCGCC
GGGTCGGGTG GGGCGGTCTC CGGTCTGCTC GACACCCTCA CGGGGCTGCT GACGCCCGCC
GTGAAGATCG AGACCCTCGT GATGCTGCTC GTCATCACCG CGCTGGTGGC GCTGCGGTCG
CCGCTCGTGC TCGTGGCCGT CCCGACCCTC GTGTGGCGCT ACGCCGGGTC GACGGAGTTC
TACTGGGGGA CGACGTGGCA CTACTCCGTC ATCCTCATGC CCATCCTCTT CGCGGCGGCG
ATCGACGGCA TCGTGCGGCT GCGTGCGTCG AGGTCGGACC TGCTCCGCAC CTACGCGCGG
CTGGCCCCTG CCGCGATGGC GGTGGTCGCC GCGGTGCTCG TCACGCAGTT CCCGCTGCGT
GACCTGTGGT CGCCCGCCAC GTACGAGCGC AGCGAGCGTG TCGCGTCGGC CGAGCGTGCC
GTCGCGGCGG TGCCGGCCGG GGCGAGCGTC GCGAGCGACC GCGGGCTCAT CGTCCAGCTG
GCCACGGACC GCGAGGTGTA CTGGATCTCG ACGTCACCGT CCGTGCGGCC CGACTACGTG
GTGATCGACC AGCTGTCCTG GGGCGGGAAC GCCCCCGTCG ACGTCGAGCA GTACGCCGAG
CGTGCCTTCC CGGGGACCGA GTACACCGTC GTCTTCGACG AGGCCGGGTA CGTGGTGGTC
GAGCGGACCG CCGGCTGA
|
|---|
| Protein sequence | MDQGHSEREQ TAAPTAGGRP GAPESDGRDD QQAAPHGEPG GDVRSASPES SRVASALRAA
VRGPVVHWPV TVLTLVAFLA YLTLSLARWY RWENPSWDNA IFEQAIAGYA RLGAPIVPIK
GPDFNQLGDH FSPLLVVIAP FYRVFPSPVT LLVAQCVLVA VSVVPIALVA RRLLGAWPGL
AVGFAYAFAW GIQSAVDVQF HEYALAVPLL AFGMAAFLTE RWRASAVWVV LLLGVKEDLG
LTVAAFGVVL WLRGQRRLGT AVAAVGAAGF VLVLTVIVPF FNPQGRYDYW GKLSEDGSAA
GSGGAVSGLL DTLTGLLTPA VKIETLVMLL VITALVALRS PLVLVAVPTL VWRYAGSTEF
YWGTTWHYSV ILMPILFAAA IDGIVRLRAS RSDLLRTYAR LAPAAMAVVA AVLVTQFPLR
DLWSPATYER SERVASAERA VAAVPAGASV ASDRGLIVQL ATDREVYWIS TSPSVRPDYV
VIDQLSWGGN APVDVEQYAE RAFPGTEYTV VFDEAGYVVV ERTAG
|
|---|
| |