| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_04330 |
|---|
| Symbol | |
|---|
| ID | 8632070 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | - |
|---|
| Start bp | 484663 |
|---|
| End bp | 488256 |
|---|
| Gene Length | 3594 bp |
|---|
| Protein Length | 1197 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | |
|---|
| Product | putative carbohydrate-binding protein with Ig-like domain and F5/8 type C domain |
|---|
| Protein accession | YP_003313233 |
|---|
| Protein GI | 269793778 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.647548 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACGA CGTCACCCCG CTCGCCACAC CCACCCCGTC CCTCCCACTT CCCGCCCGCT
CCGGCCCGCT CGTCCGGGCT CCACCGAGGC CGCCGGCACG CAGCGCTCGC CACCCTCACC
GCCGCCGCGC TCGCCCTCAC CCTCGCCACC CCGGCCGCGG GAGCGGGAGC GACCCTGACC
GCCTCAAGAG CCACCGCCAG CACGACGACC GGCCTGGCGC TGGCTGCCGA CGCCGACGCC
CCGACCGCCC TCGCCCGCCC GGTGGTCCTC GCCACCTACG CGGACGAGGC CCCGGCCCTC
CCGGCCCAGG TCGAGGTGAC GACCGGTGGC GGCACGACCC GCCTCGCCGA CGTCGTCTGG
GACGTCGACG ACTACGTGTT CGACGCGCAC TACCGCTCCG TCGCGGTCAC CGGCACCGTC
GAGGAGACGC TCCCCGTGGA GGCCCAGGTC GAGGTCGTCC CGCGTGGTGT CGAGTACTTC
GTCGACTCGG GCGCCGTCAC CTCGACCCCG CCCTTCGACG CCGTCGCGGC CCTCGCCGGG
AGTGCGGGCG ACGGCACCCT GCGCCACACG GTCGCCGACC AGCGGGCGAC GACCGGCTGG
GGGTACGTCA ACGACGGCGA CACCTCCGTC GGCGTCCGCG CCTCGACCAA CCCCCTCGAC
AAGGACGCCG GAGGCCTGTG GGCACGGGGC AGCGGCGCGG GCGCCCAGCC GATCGTCTAC
CGGCTGCCCC TGGAGGCCGG CGAGCACACC GTGACCGCCG GATTCCGCGA GTGGTGGAGC
GGCCCCCGCA CCATGTCGGT CACCCTCGTC TCCCCCTCGG GCCAGCGCTC CGTGGTCTCC
CCGAGCGTCG TGGTGAGCAA CGCCGCGGGC CGCACCACCG CGATGGTCTC CGCGACCGTC
ACGGTCGACG AGCCCGGTGT CTCCGAGCTG CGCGTCGAGC GCGCCGCCGG CAGCGAGGCC
CCGACCCTCG GCTGGTTCGC GGTCGCCGCG GGCCGCGTCG ACGTCGACAC CGCCCCGGTG
GTCGTCGCCG CCCCGACCAT CACCCCGGGC GACGGCGCCT ACTCCACCGC CCAGACCGTC
ACCGTCGCCA GCCCCACCGC GGGTGCCTCG GTCTACGTGA CCACCGACGG CTCTGACCCC
TCGCGCAGCA ACGGCTCGCT CTACACCGAG CCCTTCGTCC TCGACAGCAC CACGACGGTC
AAGGCGCGCG CCTACCGCAA CGGCACCGCG AGCGCGGTCG CGACCTCACG GCTGAGCATC
GAGCTCGTGC CCGAGGATGG CTACGAGGCC GTGCCGGTGG GCCGGACGTG GTTCGACACC
GCGGGCAACC CGATCCAGGC GCACGGCGGC GGGTTCCTCG AGAAGGACGG CTGGTACTAC
TGGGTCGGCG AGAACAAGGC CCACGACGGC GCCGTGCTGC TCGGTGTGAG CCTGTACAGG
TCGCAGGACC TCAAGAACTG GGAGTACGTC AAGGAGCTCG TCACCCAGGA CTCCGCCCCG
GAGCTGAAGG ACTCCAAGTG GGAGCGCCCG AAGCTCGTCT ACAACGCGAA GACCGACATG
TTCGTGCTGT GGGGCCACTG GGAGCGTGCG GGCGACTACT CCGCCTCGCA CCTCGTGGTC
GCGACGAGCC CGACGGTCGA CGGCGACTAC ACCTTCGTCA AGCACTTCCG TCCGGGAGTC
GGCGAGGTCA CGACCGAGCA CGAGGACCCC ACCTACACCG GGGGCGACGG CCTCTGGGGC
TACGGCTCGC GCGACTTCAC GGTCTTCAAG GACCCGGACA GCGACAAGGC GTACCTGCTG
TCCTCCGAGG ACCACACGAG TATGCGCCTG TACCCGCTGA CCGACGACTA CGCCGACGTC
GACTGGGAGG CCTCGTTCCC CGTGTTCGAG GGGCAGGGCC GGGAGGCACC TGCCGTCGTG
AAGATCGGCG AGTACTACCT GGCCTTCACC TCGGGCCAGT CCGGCTGGTA CCCGAACCAG
ACGCGGGTCG CGTGGACCAA GGACATCGCC GACCCCGACG GGTGGTCCGA GCCCGTGCTG
GTCGGCAACA ACACGTCGTT CTACAGCCAG CCGACCAACA TCATGACCAT CGACCGCCAG
GACGGCGGGC GTGAGTACGT GTACATGGGC GACCGCTGGA ACTCGAAGAA GCTCGGGACC
TCCACCTACG TGTGGCTGCC GTTGAGCATC GACCCCGCCG ACCCGTCGAC GGTGTCGCTC
GACTACCGGC CGGCGTGGAG CCTCGACTCC GCGACGGGCG CCATCGACTA CCCGGAGGAC
GTGCTGGTCT CCGAGGGGAA GCCGGTCACC GCGGACGCGG TCGACGAGGC GCACGCCGCC
TCGGTGGCCA ACGACGGCGA GTACACCAAC ACCGCGACGT GGGGCGACAG CTCGGCGTAC
TTCCAGCCCA CAGGCGTCCC CTTCAGCTGG ACGGTCGACC TCGAGGAGGT CCAGGACCTC
AGCCGCGTGG ACCTCAGCTT CCGCAGCTAC AACGGATCCG AGGCGTACCA CGGGTACACG
GTCTCGGGCA GTGTCGACGG CACCACGTGG ACGCAGCTGG TGGGGCAGCT CGGCAACACC
ACGGTCGGCT TCACCAGCGA CCCGCTGGCC GGGCAGTACC GGTACGTGCG GCTCGACGTC
GCGCAGGTGG TCAACTCCCA CAACGGCAAC GCGGCCGCCT GGGCCGCAGG CCTCGTCGAG
GTGCAGGTCT ACGCGCACGA GGAGGAGGCG CAGGCCGCCG AGACGGTGAC CATCGACCTG
CCCGAGCCGG CCGCGAGCGG CTGGCACACC ACGGCACCGG TGCTCACCGT CTCGCGCGAC
GACGGTCAGG CCGGGCCGCA GGAGGACGAC GTCGCGCAGG CGGCCGAGGG GGCCGTCGTC
GCGGCTGCGG CCGGACCGGG GGCCGAGTAC CGGCTCGACG GCGGGCCGTG GACGGTCTAC
TCCGAGCCCG TGGTCGTCGG GGACGGCGCC CGCGTCGTCG AGGCGCGGGC GACCGACGAC
GGCGTGCCGT CGACCGCGGT GTCCCGGGCC GACGTCGCTG TCGACACCAC GGCACCGACC
GTGGCGCTGG TGGTCGACGA CGCCCGGCTG CTCACGGTCG AGGCGACGGA CGCGACCTCG
GGCGTCGCCC GGGTCGAGGT GTCCTTCGAC GGCGCGGACT GGGTCGCGCT CGTGGCCCCG
GTCCAGCTCG ACGACGCCGC GACGGTGGTC CGTGCGCGGG CCGTCGACGT CGCCGGCCTG
GTGAGCCTGG TCGGGGAGGC GTCCGTCCCC GCGGCGGTCG TCGACCCCGA GCCGACGGTC
GACCCGACCG ACGGGCCGAC CACACCCGGT GAGCCGACGG CACCCCCGAC GGACCCGGGC
ACGGGCGCCG TCGGCGGCGG GGGCCAGGGC ACCGTGGGCT CGGGGACAGT GGGCTCGGGC
ACCGTGGACG CGACGCCCGG GGCCACGACC TCGACGACGT CGGGTCTCGC AGCGACCGGC
GCCAGCGTGG TCGTCGCCGC TCTCGCCGCG CTGCTCCTCG CGGCCGCCGG GGCGCTCGTC
GTGGCACGAC GACGGGCTCC CGGCAGCACA CCGGAGGCCG GCAGCCGCGG CTGA
|
|---|
| Protein sequence | MTTTSPRSPH PPRPSHFPPA PARSSGLHRG RRHAALATLT AAALALTLAT PAAGAGATLT
ASRATASTTT GLALAADADA PTALARPVVL ATYADEAPAL PAQVEVTTGG GTTRLADVVW
DVDDYVFDAH YRSVAVTGTV EETLPVEAQV EVVPRGVEYF VDSGAVTSTP PFDAVAALAG
SAGDGTLRHT VADQRATTGW GYVNDGDTSV GVRASTNPLD KDAGGLWARG SGAGAQPIVY
RLPLEAGEHT VTAGFREWWS GPRTMSVTLV SPSGQRSVVS PSVVVSNAAG RTTAMVSATV
TVDEPGVSEL RVERAAGSEA PTLGWFAVAA GRVDVDTAPV VVAAPTITPG DGAYSTAQTV
TVASPTAGAS VYVTTDGSDP SRSNGSLYTE PFVLDSTTTV KARAYRNGTA SAVATSRLSI
ELVPEDGYEA VPVGRTWFDT AGNPIQAHGG GFLEKDGWYY WVGENKAHDG AVLLGVSLYR
SQDLKNWEYV KELVTQDSAP ELKDSKWERP KLVYNAKTDM FVLWGHWERA GDYSASHLVV
ATSPTVDGDY TFVKHFRPGV GEVTTEHEDP TYTGGDGLWG YGSRDFTVFK DPDSDKAYLL
SSEDHTSMRL YPLTDDYADV DWEASFPVFE GQGREAPAVV KIGEYYLAFT SGQSGWYPNQ
TRVAWTKDIA DPDGWSEPVL VGNNTSFYSQ PTNIMTIDRQ DGGREYVYMG DRWNSKKLGT
STYVWLPLSI DPADPSTVSL DYRPAWSLDS ATGAIDYPED VLVSEGKPVT ADAVDEAHAA
SVANDGEYTN TATWGDSSAY FQPTGVPFSW TVDLEEVQDL SRVDLSFRSY NGSEAYHGYT
VSGSVDGTTW TQLVGQLGNT TVGFTSDPLA GQYRYVRLDV AQVVNSHNGN AAAWAAGLVE
VQVYAHEEEA QAAETVTIDL PEPAASGWHT TAPVLTVSRD DGQAGPQEDD VAQAAEGAVV
AAAAGPGAEY RLDGGPWTVY SEPVVVGDGA RVVEARATDD GVPSTAVSRA DVAVDTTAPT
VALVVDDARL LTVEATDATS GVARVEVSFD GADWVALVAP VQLDDAATVV RARAVDVAGL
VSLVGEASVP AAVVDPEPTV DPTDGPTTPG EPTAPPTDPG TGAVGGGGQG TVGSGTVGSG
TVDATPGATT STTSGLAATG ASVVVAALAA LLLAAAGALV VARRRAPGST PEAGSRG
|
|---|
| |